Data from: Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella

Hamm CA, Begun DJ, Vo A, Smith CCR, Saelao P, Shaver AO, Jaenike J, Turelli M

Date Published: August 26, 2014

DOI: http://dx.doi.org/10.5061/dryad.0pg63

 

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Title R Code
Downloaded 22 times
Description This R file contains all of the code necessary to reproduce the analyses presented in the paper (except the phylogenetics) and figs 1, 3, and 4.
Download SWD_Wolbachia_code.R (15.25 Kb)
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Title SWD_Wolbachia
Downloaded 22 times
Description This file contains all data needed to reproduce our results.
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Title SWD_phylo2
Downloaded 9 times
Description This nexus file contains the alignment nDNA and mtDNA used in the paper, plus the MrBays block required to conduct the partitioned Bayesian analysis described in the paper. MrBayes v3.2.2 using mpi for faster processing. MrBayes was executed as follows: mpirun -n 5 mb SWD_phylo2.nex > out.txt
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Title Dros_COIa
Downloaded 10 times
Description Nexus file with aligned Drosophila COI data. To generate the neighbor joining tree I opened PAUP* , loaded the data , entered the command "nj" and then saved the tree output.
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Title SWD_COI_Accession_numbers
Downloaded 14 times
Description GenBank accession numbers for DNA sequences generated for this paper
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When using this data, please cite the original publication:

Hamm CA, Begun DJ, Vo A, Smith CCR, Saelao P, Shaver AO, Jaenike J, Turelli M (2014) Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella. Molecular Ecology 23(19): 4871-4885. http://dx.doi.org/10.1111/mec.12901

Additionally, please cite the Dryad data package:

Hamm CA, Begun DJ, Vo A, Smith CCR, Saelao P, Shaver AO, Jaenike J, Turelli M (2014) Data from: Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0pg63
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