Data from: Body mass-corrected molecular rate for bird mitochondrial DNA

Nabholz B, Lanfear R, Fuchs J

Date Published: August 1, 2016

DOI: https://doi.org/10.5061/dryad.1040d

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Title Full nucleotide sequences alignment
Downloaded 1 time
Description Alignments of the 12 H-stranded protein-coding genes (i.e. all the protein-coding genes except NADH-dehydrogenase 6, ND6) for 475 species
Download mito.fasta (5.309 Mb)
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Title Phylogenetic tree
Downloaded 7 times
Description Phylogenetic tree of 475 species following the topology of Prum et al. (2015)
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Title Chronogram Calibration sets 2
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Description Chronogram estimated using the calibration sets 2 (see table 1 of Nabholz et al. 2016)
Download Chronogram_Calibration_sets_2.tree (27.21 Kb)
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Title Chronogram Calibration sets 4
Downloaded 3 times
Description Chronogram estimated using the calibration sets 4 (see table 1 of Nabholz et al. 2016)
Download Chronogram_Calibration_sets_4.tree (27.05 Kb)
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Title R script to convert branch length in divergence dates
Downloaded 6 times
Description A R script to compute the mass-corrected substitution rate and compute the divergence dates. This program convert branch length in divergence dates by computing the mass-corrected molecular rates as described in Nabholz et al. 2016. Header of the script contains useful informations.
Download applyMassCorrectedRates.R (3.788 Kb)
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Title Harrier_Oatley_2015
Downloaded 4 times
Description This dataset is used as the first working example in Nabholz et al. 2016
Download Harrier_Oatley_2015.zip (8.392 Kb)
Download README.txt (1.441 Kb)
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Title Xiphorhynchus_Rocha_2015
Downloaded 3 times
Description This dataset is used as the second working example in Nabholz et al. 2016
Download Xiphorhynchus_Rocha_2015.zip (9.922 Kb)
Download README.txt (1.48 Kb)
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When using this data, please cite the original publication:

Nabholz B, Lanfear R, Fuchs J (2016) Body mass-corrected molecular rate for bird mitochondrial DNA. Molecular Ecology 25(18): 4438-4449. https://doi.org/10.1111/mec.13780

Additionally, please cite the Dryad data package:

Nabholz B, Lanfear R, Fuchs J (2016) Data from: Body mass-corrected molecular rate for bird mitochondrial DNA. Dryad Digital Repository. https://doi.org/10.5061/dryad.1040d
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