Data from: Cryptic species in the mountaintops: species delimitation and taxonomy of the Bembidion breve species group (Coleoptera: Carabidae) aided by genomic architecture of a century-old type specimen

Sproul JS, Maddison DR

Date Published: December 13, 2017

DOI: https://doi.org/10.5061/dryad.10qj1

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Title breve.group.revision.10
Downloaded 3 times
Description The Mesquite file used to infer gene trees for the five genes analyzed in the study.
Download breve.group.revision.10.nex (6.503 Mb)
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Title Beauti.breve.STACEY.6.500M
Downloaded 3 times
Description Input file used in STACEY species delimitation analysis as implemented in BEAST (file in readable by BEAUTI under the STACEY template option).
Download Beauti.breve.STACEY.6.500M.xml (784.8 Kb)
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Title Bembidion_aeruginosum_DNA3890_rDNA
Downloaded 1 time
Description Reference sequence of the ribosomal DNA cistron taken from a de novo assembly of the sister taxon to the breve group, Bembidion aeruginosum. This reference sequence was used in the read mapping analyses to produce copy number profiles of the rDNA.
Download Bembidion_aeruginosum_DNA3890_rDNA.fas (14.47 Kb)
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Title ReadMapping.LIB0208.B.laxatum.DNA4918
Downloaded 1 time
Description A SAM file with the results of mapping shotgun sequencing reads (available on SRA) from Bembidion laxatum (Maddison voucher DNA4918) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0208.B.laxatum.DNA4918.sam (154.1 Mb)
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Title ReadMapping.LIB0248.B.laxatum.DNA4149
Downloaded 1 time
Description A SAM file with the results of mapping shotgun sequencing reads (available on SRA) from Bembidion laxatum (Maddison voucher DNA4149) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0248.B.laxatum.DNA4149.sam (275.8 Mb)
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Title ReadMapping.LIB0249.B.ampliatum.DNA4245
Downloaded 1 time
Description A SAM file with the results of mapping shotgun sequencing reads (available on SRA) from Bembidion ampliatum (Maddison voucher DNA4245) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0249.B.ampliatum.DNA4245.sam (160.9 Mb)
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Title ReadMapping.LIB0250.B.ampliatum.DNA3593
Downloaded 1 time
Description A SAM file with the results of mapping shotgun sequencing reads (available on SRA) from Bembidion ampliatum (Maddison voucher DNA3593) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0250.B.ampliatum.DNA3593.sam (195.9 Mb)
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Title ReadMapping.LIB0245.B.lividulum.DNA4165
Downloaded 1 time
Description A BAM file with the results of mapping shotgun sequencing reads (available on SRA) from Bembidion lividulum (Maddison voucher DNA4165) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0243.B.lividulum.DNA4165.BAM (211.7 Mb)
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Title ReadMapping.LIB0245.B.lividulum.DNA5032
Downloaded 1 time
Description A BAM file with the results of mapping shotgun sequencing reads (available on SRA) from Bembidion lividulum (Maddison voucher DNA5032) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0245.B.lividulum.DNA5032.BAM (236.8 Mb)
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Title ReadMapping.LIB0182.B.lividulum.Lectotype.DNA4889
Downloaded 1 time
Description A SAM file with the results of mapping shotgun sequencing reads (available on SRA) from the electrotype of Bembidion lividulum Casey 1918 (Maddison voucher DNA4889) to a reference sequence (included in this submission) of B. aeruginosum.
Download ReadMapping.LIB0182.B.lividulum.Lectotype...89.sam (36.41 Mb)
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When using this data, please cite the original publication:

Sproul JS, Maddison DR (2017) Cryptic species in the mountaintops: species delimitation and taxonomy of the Bembidion breve species group (Coleoptera: Carabidae) aided by genomic architecture of a century-old type specimen. Zoological Journal of the Linnean Society, online in advance of print. https://doi.org/10.1093/zoolinnean/zlx076

Additionally, please cite the Dryad data package:

Sproul JS, Maddison DR (2017) Data from: Cryptic species in the mountaintops: species delimitation and taxonomy of the Bembidion breve species group (Coleoptera: Carabidae) aided by genomic architecture of a century-old type specimen. Dryad Digital Repository. https://doi.org/10.5061/dryad.10qj1
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