Data from: Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary

Feng Y, Blackburn DC, Liang D, Hillis DM, Wake DB, Cannatella DC, Zhang P

Date Published: July 12, 2017

DOI: http://dx.doi.org/10.5061/dryad.12546.2

 

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Title Phylogenetic matrix (164 species dataset)
Downloaded 12 times
Description Phylogenetic matrix containing aligned DNA sequences for 95 nuclear coding loci (88,302 bp) for 164 species of frogs, including details on character partitions and best-fit models of evolution for the partitions.
Download 164sp_95_genes_88302_2N_20170615.nexus (14.52 Mb)
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Title Phylogenetic matrix (309 species dataset)
Downloaded 18 times
Description Phylogenetic matrix containing aligned DNA sequences for 95 nuclear coding loci (88,386 bp) for 309 species of frogs, including details on character partitions and best-fit models of evolution for the partitions.
Download 309sp_95_genes_88386_2N_20170615.nexus (27.34 Mb)
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Title Maximum likelihood phylogeny of 309 species
Downloaded 13 times
Description Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 309 species, including 145 species for which data were obtained via GenBank.
Download RAxML_309sp.tre (21.99 Kb)
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Title Maximum likelihood phylogeny of 164 species
Downloaded 7 times
Description Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species.
Download RAxML_164sp.tre (13.75 Kb)
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Title Chronogram of 309 species
Downloaded 11 times
Description Chronogram generated in MCMCTREE using the maximum likelihood phylogeny generated via RAxML for 309 species, including 145 species for which data were obtained via GenBank.
Download Chronogram_309sp.tre (25.43 Kb)
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Title Chronogram of 164 species
Downloaded 5 times
Description Chronogram generated in MCMCTREE using the maximum likelihood phylogeny generated via RAxML for 164 species.
Download Chronogram_164sp.tre (13.43 Kb)
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Title Collection of maximum likelihood gene trees with bootstrap replicates
Downloaded 14 times
Description Maximum likelihood phylogeny generated via RAxML and associated nonparametric bootstrap replicates for each gene in our 95-locus dataset.
Download gene_trees.zip (5.171 Mb)
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When using this data, please cite the original publication:

Feng Y, Blackburn DC, Liang D, Hillis DM, Wake DB, Cannatella DC, Zhang P (2017) Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary. Proceedings of the National Academy of Sciences of the United States of America, online in advance of print. http://dx.doi.org/10.1073/pnas.1704632114

Additionally, please cite the Dryad data package:

Feng Y, Blackburn DC, Liang D, Hillis DM, Wake DB, Cannatella DC, Zhang P (2017) Data from: Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.12546.2
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