Data from: Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis)

Lamaze FC, Pavey SA, Normandeau E, Roy G, Garant D, Bernatchez L

Date Published: February 25, 2014

DOI: http://dx.doi.org/10.5061/dryad.12ck0.2

 

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Title 2009 data
Downloaded 63 times
Description This dataset contains: gene expression values, physiological parameters, Q_values, Minisatellites length, MHCIIb alleles, parasitological parameters.
Download data_2009_MEC-13-1125.xlsx (93.13 Kb)
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Title 2008-2009_parasites_data
Downloaded 61 times
Description This dataset contains parasitological informations for the individuals sampled in 2008 and 2009. The lakes, refere to Amanites (AMA), Belles de jour (BEL), Caribou (Car), Méthot (MET), Main de fer (MAI) and Petit Saint-Bernard (BER).
Download data_2008-2009_parasites_MEC-13-1125.xlsx (55.69 Kb)
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Title MHCIIb_genotypes_data
Downloaded 30 times
Description This dataset was generated with the genotyping pipeline described in the manuscript. It contains MHCIIb genotypes for all populations. Lakes refere to : Amanites (AMA), Belles-de-Jour (BEL), Methot (MET), Arcand (ARC), Rivard (RIV), Veillette (VEI), Caribou (CAR), Main de fer (MAI), Sorbier (SOR) and Petit saint Bernard (BER).
Download data_genotype_2008_MHCII.xlsx (55.45 Kb)
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Title Data of the laboratory experiment
Downloaded 60 times
Description This dataset contains the following variables: MHCIIb gene expression values, physiological parameters (weight, length and Fulton condition index), Minisatellites groups (either long or short based on the number of repeat), family and temperature.
Download data_laboratory-experiment.xlsx (58.47 Kb)
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Title 454 raw MHC2b sequences
Downloaded 74 times
Description This file contains raw 454 sequences of the MHC2b gene.
Download 454_seq_2011090210000039.zip (589.9 Mb)
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Title MHC_alleles_sequences
Downloaded 12 times
Description Sequences of the 29 MHC2b alleles described in the study. These sequences were aligned with muscle, using MEGAv5 and are in the fasta format.
Download MHC_alleles_aligned_10-04-2012.fasta (7.673 Kb)
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When using this data, please cite the original publication:

Lamaze FC, Pavey SA, Normandeau E, Roy G, Garant D, Bernatchez L (2014) Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis). Molecular Ecology 23(7): 1730-1748. http://dx.doi.org/10.1111/mec.12684

Additionally, please cite the Dryad data package:

Lamaze FC, Pavey SA, Normandeau E, Roy G, Garant D, Bernatchez L (2014) Data from: Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations (Salvelinus fontinalis). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.12ck0.2
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