Data from: Genomic response to selection for predatory behavior in a mammalian model of adaptive radiation

Konczal M, Koteja P, Orlowska-Feuer P, Radwan J, Sadowska ET, Babik W

Date Published: July 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.13t00

 

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Title transcriptome_and_annotation
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Description The bank vole hippocampus transcriptome and its annotation. The transcriptome was assembled from 10 individuals derived form the laboratory model of adaptive radiation.
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Title expression
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Description The directory contains expression estimates (FPKM) for all studied transcripts in liver and hippocampus tissues. It contains also results for differentiation expression analyses between predatory and control lines.
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Title allele_frequencies
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Description Allele frequencies for identified SNPs. Data are separated into noncoding, UTR-located, synonymous and nonsynonymous SNPs.
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Title Fst_tabels
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Description 500 SNPs with largest overall Fst for predatory-control and aerobic-control comparison. The directory contains also Fst estimates between each pair of lines, calculated for mentioned above set of SNPs.
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Title scripts
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Description The set of scripts used for SNPs calling, expression analyses, Fst calculation and pedigree-based simulations.
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When using this data, please cite the original publication:

Konczal M, Koteja P, Orlowska-Feuer P, Radwan J, Sadowska ET, Babik W (2016) Genomic response to selection for predatory behavior in a mammalian model of adaptive radiation. Molecular Biology and Evolution 33(9): 2429-2440. http://dx.doi.org/10.1093/molbev/msw121

Additionally, please cite the Dryad data package:

Konczal M, Koteja P, Orlowska-Feuer P, Radwan J, Sadowska ET, Babik W (2016) Data from: Genomic response to selection for predatory behavior in a mammalian model of adaptive radiation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.13t00
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