Data from: Introgression of mtDNA in Urosaurus lizards: historical and ecological processes

Haenel GJ

Date Published: November 17, 2016

DOI: http://dx.doi.org/10.5061/dryad.14811

 

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Title Sampling locations and sample sizes.
Downloaded 7 times
Description Sampling locations and initial species designations are provided for each sampling location. Site name abbreviations correspond to Figure 3. Sample sizes are given for each sampling location with mtDNA given on the first line, microsatellites the second, scale morphology the third and the forth row has additional individuals from Haenel 2007 and a manuscript that is in preparation included in figure 1 and body size analyses.
Download 1 Table S1 locations.docx (14.00 Kb)
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Title Arlequin input file microsatellites
Downloaded 2 times
Description Formatted input file of microsatellite data used in Arlequin.
Download Table S2 microsat_infileALL.arp (14.15 Kb)
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Title STRUCTURE input: microsatellites
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Description STRUCTURE input file of microsatellite alleles.Seven Microsatellites are provided in columns. The first column has individual Ids.
Download Figure S3a project_data (8.333 Kb)
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Title STRUCTURE summary: deltaK
Downloaded 9 times
Description Graph of output of summary for STRUCTURE analyses. Evanno’s K and individual assignment probabilities were used to assess the best value of K (Evanno et al. 2005). This figure shows the results as DeltaK = mean(|L"(K)|)/sd(L(K)).
Download Figure S3b deltaK.png (16.10 Kb)
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Title Input file MrBayes mtDNA sequences.
Downloaded 7 times
Description Input file used to run phylogenetic analyses in MrBayes including mtDNA sequences. U. nigricaudus included as outgroup. MrBayes block included at bottom of the file.
Download 4 Table S4a Uro16_07_25_Un_.txt (103.3 Kb)
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Title Summary of MrBayes analyses.
Downloaded 3 times
Description Table of summary of run from MrBayes phylogenetic analyses. This is the .mcmc output file.
Download 4 Table S4b Uro16_07_25_Un_.txt.mcmc (161.0 Kb)
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Title Arlequin input U. orantus mtDNA sequences.
Downloaded 5 times
Description Arlequin input file for population genetic analyses of U. orantus mtDNA sequences. Includes geographic structure.
Download 5 Table S5a infileND1CytB6_16_15Uo.arp (37.88 Kb)
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Title Arlequin input U. graciosus mtDNA sequences
Downloaded 4 times
Description Arlequin input file for population genetic analyses of U. graciosus mtDNA sequences. Includes geographic structure.
Download 5 Table S5b infileND1CytB6_16_15Ug.arp (41.73 Kb)
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Title Parameter file for Bayesian Skyline Plot analyses U. ornatus
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Description Parameter file for Bayesian Skyline Plot analyses of U. ornatus mtDNA sequence data in BEAST developed using BEAUti v1.8.2.
Download 6 Table S6a UomtDNAcodon.xml (58.31 Kb)
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Title BSP analyses log file Uo mtDNA
Downloaded 3 times
Description BSP analyses log file generated in BEAST for U. ornatus mtDNA sequence data.
Download 6 Table S6b UomtDNAcodon.log (9.959 Mb)
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Title Parameter file for BSP U. graciosus
Downloaded 1 time
Description Parameter file for Bayesian Skyline Plot analyses of U. graciosus mtDNA sequence data in BEAST developed using BEAUti v1.8.2.
Download 6 Table S6c Uro16_07_25_UgcodonEBSP.xml (57.79 Kb)
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Title BSP analyses log file U. graciosus
Downloaded 6 times
Description BSP analyses log file generated in BEAST for U. graciosus mtDNA sequence data.
Download 6 Table S6d Uro16_07_25_UgcodonEBSPcombined.log (41.45 Mb)
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Title Table of BAYESASS output
Downloaded 5 times
Description Migration Rates estimated with BAYESASS for U. graciosus and U. ornatus with lowest Bayesian deviances. Each species is a separate tab.
Download 7 Table S7 BestBA3out.xlsx (43.47 Kb)
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Title Scale trait descriptions
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Description Descriptions of scale morphology traits.
Download Table S8a scale trait descriptions.docx (12.46 Kb)
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Title Descriminant Function of Morphology
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Description SAS code and data input to develop discriminatory function for scale characters of U. graciosus and U. ornatus. Column labels match Table S8a descriptions.
Download Table S8b SAS Descrime Program.txt (30.25 Kb)
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Title Lizard body size data
Downloaded 4 times
Description Body size data used to compare SVL of parental U. graciosus to heterospecific individuals and to analyze the relations of mass to SVL.
Download Table S9a bodysize.xlsx (22.42 Kb)
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Title Mass/SVL residuals ANOVA
Downloaded 3 times
Description ANOVA table generated in SAS comparing residuals of mass to SVL among different population groups.
Download Table S9b MassSVL residulasANOVA.txt (4.072 Kb)
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When using this data, please cite the original publication:

Haenel GJ (2017) Introgression of mtDNA in Urosaurus lizards: historical and ecological processes. Molecular Ecology 26(2): 606-623. http://dx.doi.org/10.1111/mec.13930

Additionally, please cite the Dryad data package:

Haenel GJ (2016) Data from: Introgression of mtDNA in Urosaurus lizards: historical and ecological processes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.14811
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