Data from: Bayesian inference of selection in a heterogeneous environment from genetic time-series data

Gompert Z

Date Published: July 16, 2015

DOI: http://dx.doi.org/10.5061/dryad.14853

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title simulated data sets
Downloaded 11 times
Description Genetic data (*G) and environmental data (*E) infiles that were analyzed in this manuscript. These data sets were simulated in R according to the Wright-Fisher model with selection. Genetic data files with the 'sub' prefix include subsets of individuals and thus have lower sample sizes than the other files (2N = 50 or 100 instead of 200).
Download wfsims.tar.gz (10.84 Mb)
Details View File Details
Title data sets simulated with quantiNEMO
Downloaded 9 times
Description Genetic data (geno*) and environmental data (env*) infiles that were analyzed in this manuscript. These data sets were simulated using quantiNEMO.
Download qnemosims.tar.gz (2.314 Mb)
Details View File Details
Title perl script to run quantiNEMO simulations
Downloaded 8 times
Description This is a wrapper script that I wrote to run quantiNEMO to generate the simulated data files that were analyzed in the paper.
Download runSims.pl (12.24 Kb)
Details View File Details
Title source code and binaries for spatpg software
Downloaded 12 times
Description This compressed directory contains the source C++ code for the software described in the paper. A compiled binary for Linux is also included. An up-to-date version of this software can be downloaded from SourceForge (http://sourceforge.net/projects/spatpg/).
Download source.tar.gz (6.934 Mb)
Details View File Details
Title wrapper perl scripts for simulations
Downloaded 5 times
Description This compressed directory contains a set of perl scripts that were used to run the R Wright-Fisher simulations and generate the data sets analyzed in this paper.
Download simScripts.tar.gz (1.909 Kb)
Details View File Details

When using this data, please cite the original publication:

Gompert Z (2016) Bayesian inference of selection in a heterogeneous environment from genetic time-series data. Molecular Ecology 25(1): 121–134. http://dx.doi.org/10.1111/mec.13323

Additionally, please cite the Dryad data package:

Gompert Z (2015) Data from: Bayesian inference of selection in a heterogeneous environment from genetic time-series data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.14853
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: