Data from: Targeted re-sequencing of five Douglas-fir provenances reveals population structure and putative target genes of positive selection

Müller T, Freund F, Wildhagen H, Schmid KJ

Date Published: December 11, 2014

DOI: http://dx.doi.org/10.5061/dryad.14ns8

 

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Title README
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Title COMMANDS
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Description This file contains a detailed description on how to perform the analysis.
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Title Admixture results
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Description Archive containing example Admixture results for K = 2 to K = 7.
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Title bash_scripts
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Description Archives with bash scripts used in data analysis. See README.txt and COMMANDS.txt.
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Title bayenv_FIVEPOPS
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Description Example bayenv result.
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Title bayenv_TWOPOPS
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Description Example bayenv result.
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Title bayescan
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Description Example results of bayescan.
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Title doug_SeqCapExp.dump
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Description psql database dump, see README.txt and COMMANDS.txt.
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Title Results
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Description Several files used for and generated during data analysis, for instance a .vcf file. See REAMDE.txt and COMMANDS.txt
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Title lositan
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Description Example lositan results
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Title msABC
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Description msABC files used in the publication.
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Title population_files
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Description Archive with files containing population information, e.g. needed for Fst.
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Title python_scripts
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Description Archive of python scripts used in data analysis. See Readme in that archive and COMMANDS.txt
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Title ref2.bed
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Description ref2.bed files needed for coverage calculations. See COMMANDS.txt
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Title Rscripts
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Description Archive with R-scripts used during data analysis. See Readme in that archive and COMMANDS.txt
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Title samples_sorted_by_locID
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Description File with information about sample and location IDs.
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Title target_regions
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Description This archive contains the target regions as well as results of blastx vs TAIR and Ptaeda. Furthermore it contains bwa index files.
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When using this data, please cite the original publication:

Müller T, Freund F, Wildhagen H, Schmid KJ (2014) Targeted re-sequencing of five Douglas-fir provenances reveals population structure and putative target genes of positive selection. Tree Genetics & Genomes 11: 816. http://dx.doi.org/10.1007/s11295-014-0816-z

Additionally, please cite the Dryad data package:

Müller T, Freund F, Wildhagen H, Schmid KJ (2014) Data from: Targeted re-sequencing of five Douglas-fir provenances reveals population structure and putative target genes of positive selection. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.14ns8
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