Data from: Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response

Becker EA, Seitzer PM, Tritt A, Larsen D, Krusor M, Yao AI, Wu D, Madern D, Eisen JA, Darling AE, Facciotti MT

Date Published: December 10, 2014

DOI: http://dx.doi.org/10.5061/dryad.1546n

 

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Title GeneraSpecificMolecularMarkers
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Description The Haloarcula, Halorubrum and Haloferax genera contain seven, fourteen, and fifteen sequenced members respectively. Genes that are unique, universal to the genus, and single-copy in these genera may serve as good molecular markers for metagenomic analyses. We include a list of the homology clusters as well as the protein translations, multiple alignments and a hidden Markov model for each proposed molecular marker.
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Title Supplementary_Code_1_MySQL_database_mining
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Description Scripts for accessing haloarchaeal genomic data in a navigable SQL database. A copy of the database file is available upon request.
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Title Supplementary_Dataset_5_All_pI_histograms
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Download Supplementary_Dataset_5_All_pI_histograms.zip (529.4 Kb)
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Title Supplementary_Dataset_6_Abnormal_GC_regions
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Download Supplementary_Dataset_6_Abnormal_GC_regions.zip (129.0 Kb)
Download README.txt (1.113 Kb)
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Title Supplementary_Dataset_6_All_GC_plots
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Title Supplementary_Dataset_7_All_GC_changepoint_plots
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Download Supplementary_Dataset_7_All_GC_changepoin...ts.zip (5.198 Mb)
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When using this data, please cite the original publication:

Becker EA, Seitzer PM, Tritt A, Larsen D, Krusor M, Yao AI, Wu D, Madern D, Eisen JA, Darling AE, Facciotti MT (2014) Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response. PLoS Genetics 10(11): e1004784. http://dx.doi.org/10.1371/journal.pgen.1004784

Additionally, please cite the Dryad data package:

Becker EA, Seitzer PM, Tritt A, Larsen D, Krusor M, Yao AI, Wu D, Madern D, Eisen JA, Darling AE, Facciotti MT (2014) Data from: Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1546n
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