Data from: Next-generation sampling: pairing genomics with herbarium specimens provides species-level signal in Solidago (Asteraceae)

Beck JB, Semple JC

Date Published: June 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.16pj5

 

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Title barcode keyfile
Downloaded 4 times
Description This file associates sequencing barcodes with samples.
Download Solidago_keyfile.txt (12.63 Kb)
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Title Solidago_TASSEL_options
Downloaded 13 times
Description This file details variable options used during the TASSEL alignment and SNP calling pipeline.
Download Solidago_TASSEL_options.xlsx (50.12 Kb)
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Title Junceae_30percent_hapmap.hmp
Downloaded 5 times
Description Hapmap file for Solidago subsection Junceae filtered for SNPs present in at least 30% of samples.
Download Junceae_30percent_hapmap.hmp.txt (139.9 Kb)
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Title Junceae_70percent_hapmap.hmp
Downloaded 4 times
Description Hapmap file for Solidago subsection Junceae filtered for SNPs present in at least 70% of samples.
Download Junceae_70percent_hapmap.hmp.txt (47.29 Kb)
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Title Squarrosae_30percent_hapmap.hmp
Downloaded 3 times
Description Hapmap file for Solidago subsection Squarrosae filtered for SNPs present in at least 30% of samples.
Download Squarrosae_30percent_hapmap.hmp.txt (170.7 Kb)
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Title Squarrosae_70percent_hapmap.hmp
Downloaded 3 times
Description Hapmap file for Solidago subsection Squarrosae filtered for SNPs present in at least 70% of samples.
Download Squarrosae_70percent_hapmap.hmp.txt (22.73 Kb)
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Title Triplinerviae_30percent_hapmap.hmp
Downloaded 3 times
Description Hapmap file for Solidago subsection Triplinerviae filtered for SNPs present in at least 30% of samples.
Download Triplinerviae_30percent_hapmap.hmp.txt (264.1 Kb)
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Title Triplinerviae_70percent_hapmap.hmp
Downloaded 3 times
Description Hapmap file for Solidago subsection Triplinerviae filtered for SNPs present in at least 70% of samples.
Download Triplinerviae_70percent_hapmap.hmp.txt (44.70 Kb)
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Title FastqToTagCountPlugin
Downloaded 4 times
Description FastqToTagCountPlugin XML file
Download FastqToTagCountPlugin.xml (374 bytes)
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Title FastqToTBTPlugin
Downloaded 4 times
Description FastqToTBTPlugin XML file
Download FastqToTBTPlugin.xml (423 bytes)
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Title GBSHapMapFiltersPlugin.chr1.snpmerged
Downloaded 3 times
Description GBSHapMapFiltersPlugin.chr1.snpmerged XML file
Download GBSHapMapFiltersPlugin.chr1.snpmerged.xml (536 bytes)
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Title MergeDuplicateSNP_vcf_Plugin.chr1
Downloaded 3 times
Description MergeDuplicateSNP_vcf_Plugin.chr1 XML file
Download MergeDuplicateSNP_vcf_Plugin.chr1.xml (319 bytes)
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Title MergeMultipleTagCountPlugin
Downloaded 4 times
Description MergeMultipleTagCountPlugin XML file
Download MergeMultipleTagCountPlugin.xml (327 bytes)
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Title MergeDuplicateSNPsPlugin.chr1
Downloaded 3 times
Description MergeDuplicateSNPsPlugin.chr1 XML file
Download MergeDuplicateSNPsPlugin.chr1.xml (458 bytes)
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Title MergeTagsByTaxaFilesPlugin
Downloaded 3 times
Description MergeTagsByTaxaFilesPlugin XML file
Download MergeTagsByTaxaFilesPlugin.xml (326 bytes)
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Title TagCountToFastqPlugin
Downloaded 2 times
Description TagCountToFastqPlugin XML file
Download TagCountToFastqPlugin.xml (348 bytes)
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Title TagsToSNPByAlignmentPlugin.chr1
Downloaded 3 times
Description TagsToSNPByAlignmentPlugin.chr1 XML file
Download TagsToSNPByAlignmentPlugin.chr1.xml (629 bytes)
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Title tbt2vcfPlugin.chr1
Downloaded 6 times
Description tbt2vcfPlugin.chr1 XML file
Download tbt2vcfPlugin.chr1.xml (460 bytes)
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Title UExportTagPairPlugin
Downloaded 10 times
Description UExportTagPairPlugin XML file
Download UExportTagPairPlugin.xml (395 bytes)
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Title UTagCountToTagPairPlugin
Downloaded 3 times
Description UTagCountToTagPairPlugin XML file
Download UTagCountToTagPairPlugin.xml (349 bytes)
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When using this data, please cite the original publication:

Beck JB, Semple JC (2015) Next-generation sampling: pairing genomics with herbarium specimens provides species-level signal in Solidago (Asteraceae). Applications in Plant Sciences 3(6):1500014. http://dx.doi.org/10.3732/apps.1500014

Additionally, please cite the Dryad data package:

Beck JB, Semple JC (2015) Data from: Next-generation sampling: pairing genomics with herbarium specimens provides species-level signal in Solidago (Asteraceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.16pj5
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