Data from: Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt.

Candy JR, Campbell NR, Beacham TD, Grinnell MH, Narum SR, Larson WA

Date Published: March 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.1797v

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Thaleichthys pacificus, Osmeridae RAD sequences for putative neutral SNP loci
Downloaded 9 times
Description File consists of loci name, loci sequence, and SNP location in comma delimited file.
Download Eulachon_NeutralRADs.csv (377.0 Kb)
Details View File Details
Title Thaleichthys pacificus, Osmeridae RAD sequences from putative adaptive SNP loci
Downloaded 5 times
Description File consists of loci name, loci sequence and SNP location in comma delimited format
Download Eulachon_AdaptiveRADS.csv (18.68 Kb)
Details View File Details
Title Thaleichthys pacificus, Osmeridae putative adaptive SNP loci
Downloaded 11 times
Description This file in genpop format and contains 193 SNPs per sample
Download 1_EulachonSig.gen (484.9 Kb)
Details View File Details
Title Thaleichthys pacificus, Osmeridae putative neutral loci
Downloaded 7 times
Description This file is in genpop format and contains 3,911 SNPS per sample
Download 2_EulachonNonSig.gen (9.705 Mb)
Details View File Details
Title Paired-end extended sequences for eulachon
Downloaded 6 times
Download Paired-end extended sequences for eulachon.out (82.15 Kb)
Details View File Details
Title R code to Impute missing SNP data.
Downloaded 50 times
Description This code was developed by Matt Grinnell to impute missing SNPs from the eulachon datasets so it could be used by ONCOR for assignment testing.
Download ImputeMissing.R (5.349 Kb)
Details View File Details
Title R script to calculate effective population size with an R2 value
Downloaded 102 times
Download R script to calculate effective population....docx (67.88 Kb)
Details View File Details
Title R script to impute missing loci by population
Downloaded 66 times
Download R script to impute missing loci by population.docx (18.38 Kb)
Details View File Details
Title Thaleichthys pacificus, Osmeridae key file for NCBI SRA database
Downloaded 6 times
Description This file contains: sample name, sample number, biosample account, library ID, and barcode.
Download Eulachon_Key.txt (62.5 Kb)
Details View File Details

When using this data, please cite the original publication:

Candy JR, Campbell NR, Grinnell MH, Beacham TD, Larson WA, Narum SR (2015) Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt. Molecular Ecology Resources 15(6): 1421–1434. http://dx.doi.org/10.1111/1755-0998.12400

Additionally, please cite the Dryad data package:

Candy JR, Campbell NR, Beacham TD, Grinnell MH, Narum SR, Larson WA (2015) Data from: Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1797v
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: