Data from: Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis

Stevison LS, Noor MAF

Date Published: August 20, 2010

DOI: http://dx.doi.org/10.5061/dryad.1877

 

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Title SNPMarkers.csv
Downloaded 35 times
Description A list of all the markers used in the publication and their genomic position as well as respective locations in both the D. pseudoobscura and D. persimilis genome. This also includes the sequence of each SNP and the base position in the two strains of D. persimilis used for genotyping.
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Title Recombinationintervals.csv
Downloaded 47 times
Description A list of all intervals with the number of inferred crossovers, the physical distance in both D. pseudoobscura and D. persimilis and the name of the two markers at the endpoints of the interval (found in 'SNP markers.csv'). Also included are the 95% confidence intervals of the recombination rate as well as various genomic features, such as GC counts, GC3 counts, diversity and divergence.
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Title chromosome2alignmentannotated.gz
Downloaded 23 times
Description Zipped archive of chromosome 2 sequence alignment including Drosophila persimilis sequence (2 strains), D. pseudoobscura, D. miranda, and others. This file also includes the annotation information.
Download chromosome2alignmentannotated.gz (124.5 Mb)
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Title Perl scripts for analysis
Downloaded 37 times
Description Zipped set of scripts, sample input and sample output files of programs used to design SNPs to distinguish 2 lines of D. persimilis, and further to extract GC content, diversity, divergence, and motif abundance of a published genomic sequence for correlation to recombination rate variation.
Download LSSScriptsFINAL.zip (164.7 Kb)
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When using this data, please cite the original publication:

Stevison LS, Noor MAF (2010) Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis. Journal of Molecular Evolution 71(5-6): 332-345. http://dx.doi.org/10.1007/s00239-010-9388-1

Additionally, please cite the Dryad data package:

Stevison LS, Noor MAF (2010) Data from: Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1877
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