Data from: Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

Stuart T, Eichten S, Cahn J, Karpievitch Y, Borevitz J, Lister R

Date Published: December 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.187b3

 

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Title Figure 2 - source data 3
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Description Arabidopsis TE variants, including final classifications for each variant as a TE insertion, deletion, or NA.
Download TEPID_TEPAV.tsv.gz (1.543 Mb)
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Title Figure 1 - source data 1
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Description TE insertions in Ler
Download insertions_ler.bed.gz (10.36 Kb)
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Title Figure 1 - source data 2
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Description TE absences in Ler
Download deletions_ler.bed.gz (10.98 Kb)
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Title Figure 2 - source data 1
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Description TE insertions in all 216 Arabidopsis accessions
Download insertions.tsv.gz (768.4 Kb)
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Title Figure 2 - source data 2
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Description TE absences in all 216 Arabidopsis accessions
Download absences.tsv.gz (656.8 Kb)
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Title Figure 2 - source data 4
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Description TE family enrichments for TE insertion and TE deletion variants
Download family_enrichments.tsv (15.20 Kb)
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Title Figure 4 - source data 1
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Description Significantly differentially expressed genes dependent on TE presence/absence
Download sig_genes.tsv (28.73 Kb)
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When using this data, please cite the original publication:

Stuart T, Eichten S, Cahn J, Karpievitch Y, Borevitz J, Lister R (2016) Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation. eLife 5: 20777. http://dx.doi.org/10.7554/elife.20777

Additionally, please cite the Dryad data package:

Stuart T, Eichten S, Cahn J, Karpievitch Y, Borevitz J, Lister R (2016) Data from: Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.187b3
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