Data from: High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA

De Barba M, Miquel C, Lobreaux S, Quenette PY, Swenson JE, Taberlet P

Date Published: August 10, 2016

DOI: http://dx.doi.org/10.5061/dryad.18tg7

 

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Title Readme
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Title obitools_script
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Description Scripts to filter raw sequence data and perform conversion to table
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Title R_python_scripts
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Description R and python scripts to extract genotypes from tabular data file
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Title rawdata_scandinavia.ngsfilter
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Description ngsfilter file for scandinavian rawdata analysis
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Title filtereddata_references
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Description assembled and filtered fastq sequences from reference samples
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Title rawdata_pyrenees_R1
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Description Raw fastq paired-end 1 sequences from pyrenean bear samples
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Title rawdata_pyrenees_R2
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Description Raw fastq paired-end 2 sequences from pyrenean bear samples
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Title rawdata_scandinavia_R1
Downloaded 7 times
Description Raw fastq paired-end 1 sequences from scandinavian bear samples
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Title rawdata_scandinavia_R2
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Description Raw fastq paired-end 2 sequences from scandinavian bear samples
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When using this data, please cite the original publication:

De Barba M, Miquel C, Lobréaux S, Quenette PY, Swenson JE, Taberlet P (2017) High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA. Molecular Ecology Resources 17(3): 492–507. http://dx.doi.org/10.1111/1755-0998.12594

Additionally, please cite the Dryad data package:

De Barba M, Miquel C, Lobreaux S, Quenette PY, Swenson JE, Taberlet P (2016) Data from: High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.18tg7
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