Data from: Parasite load and MHC diversity in undisturbed and agriculturally modified habitats of the ornate dragon lizard

Radwan J, Kuduk K, Levy E, LeBas N, Babik W

Date Published: October 29, 2014

DOI: http://dx.doi.org/10.5061/dryad.19264

 

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Title MHC class I alleles
Description Ctenophorus ornatus MHC I putative functional allele sequences. Aligned fasta file.
Download Ctenophorus_ornatus_MHC_I_putative_functi...es.fas (51.07 Kb)
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Title Individual tick count and number of MHC allles
Description Ctenophorus ornatus Individual tick count and number of MHC allles. Information about habitat and population of origin is also included. Excel format.
Download Ctenophorus_ornatus_tick_load_n_MHC_alleles.xlsx (17.41 Kb)
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Title MHC and microsatellite genotypes
Description MHC and microsatellite genotypes. MHC genotypes are in Structure-like dominant format (each allele trated as a separate locus). Microsatellite genotypes are in Structure-like one-line-per genotype format. Excel file.
Download Ctenophorus_ornatus_MHC_msat_genotypes.xlsx (311.1 Kb)
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Title Ctenophorus_ornatus_expression_data
Description This file contains results of MHC genotyping of 4 individuals using genomic DNA (gDNA) and cDNA synthesized from DNAse-treated RNA (cDNA); for one individual only cDNA data are available. Because in no gDNA/cDNA pair coverage in both samples was sufficient for rigorous genotyping (min 300 reads), we present raw read counts of putative true alleles (identified as such using the entire dataset). On the basis of the read counts in gDNA/cDNA samples we assign "expressed", "not_expressed" and in few cases "undetermined" expression status to those alleles.
Download Ctenophorus_ornatus_expression_data.xlsx (19.35 Kb)
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When using this data, please cite the original publication:

Radwan J, Kuduk K, Levy E, LeBas N, Babik W (2014) Parasite load and MHC diversity in undisturbed and agriculturally modified habitats of the ornate dragon lizard. Molecular Ecology 23(24): 5966-5978. http://dx.doi.org/10.1111/mec.12984

Additionally, please cite the Dryad data package:

Radwan J, Kuduk K, Levy E, LeBas N, Babik W (2014) Data from: Parasite load and MHC diversity in undisturbed and agriculturally modified habitats of the ornate dragon lizard. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.19264
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