Data from: Museum genomics: low-cost and high-accuracy genetic data from historical specimens

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title dryad.tar.bz2
Downloaded 24 times
Description This tarball consists of three main types of files. 1. library*.sorted.bam => These are the files that resulted from using Bowtie to map the trimmed reads in the seq/ dir to the the RGSC3.4 assembly. Also included are associated index (*.bai) files 2. assembleMito.fa => This is the assembly of the sequenced rat's mitochondrial genome resulting from de novo assembly of the reads using ABySS. 3. seq/ contains the reads trimmed for contamination, adapter, and low-quality as discussed in the publication. library5* is derived from the molar. library6* is derived from the toe. *_1_* reads are forward reads; *_2_* reads are reverse reads. Any reads that lost their mate-pair during the trimming process are not included here although they were used for mapping. These reads are available from S. Singhal upon request. Note: scripts used for analysis and other data are available from S. Singhal upon request.
Download dryad.tar.bz2 (9.315 Gb)
Download README.txt (1.023 Kb)
Details View File Details

When using this data, please cite the original publication:

Rowe KC, Singhal S, MacManes MD, Ayroles JF, Morelli TL, Rubidge EM, Bi K, Moritz CC (2011) Museum genomics: low-cost and high-accuracy genetic data from historical specimens. Molecular Ecology Resources 11(6): 1082–1092. http://dx.doi.org/10.1111/j.1755-0998.2011.03052.x

Additionally, please cite the Dryad data package:

Rowe KC, Singhal S, MacManes MD, Ayroles JF, Morelli TL, Rubidge EM, Bi K, Moritz CC (2011) Data from: Museum genomics: low-cost and high-accuracy genetic data from historical specimens. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1fm3f
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: