Data from: Diagnostic gene expression biomarkers of coral thermal stress

 

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Title Expression Analysis R file
Downloaded 69 times
Description This file contains the annotated R scripts necessary to conduct all gene expression analyses described in the accompanying paper, from initial normalization of raw Ct values to creating figures.
Download QPCRanalysis.R (8.024 Kb)
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Title Data for Heat Gradation Experiment
Downloaded 47 times
Description This folder contains all the input data files for gene expression analysis (including raw Ct and normalized expression data) in addition to temperature/light logger data (and associated R scripts for generating figures) and sample processing notes.
Download HeatGrad.zip (46.69 Kb)
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Title in situ Bleaching Data
Downloaded 46 times
Description This folder contains all data for gene expression analysis (including raw and normalized Ct data), sequencing data from Symbiodinium genotyping and the raw PAM data and associated R scripts for analysis and figure generation.
Download BNB.zip (6.296 Mb)
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When using this data, please cite the original publication:

Kenkel CD, Sheridan C, Leal MC, Bhagooli R, Castillo KD, Kurata N, McGinty E, Goulet TL, Matz MV (2013) Diagnostic gene expression biomarkers of coral thermal stress. Molecular Ecology Resources 14(4): 667–678. http://dx.doi.org/10.1111/1755-0998.12218

Additionally, please cite the Dryad data package:

Kenkel CD, Sheridan C, Leal MC, Bhagooli R, Castillo KD, Kurata N, McGinty E, Goulet TL, Matz MV (2014) Data from: Diagnostic gene expression biomarkers of coral thermal stress. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1h0n1
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