Data from: "Transcriptome sequences for Campanula gentilis" in Genomic Resources Notes accepted 1 April 2015 – 31 May 2015

Demet T, Luebert F, Mansion G, Muller LAH

Date Published: May 3, 2016

DOI: http://dx.doi.org/10.5061/dryad.1hj3m

 

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Title Transcriptome contigs
Downloaded 7 times
Description Transcriptome contigs obtained through the assembly of merged sequence read data sets from normalised and non-normalised cDNA libraries
Download transcriptomeContigs.fasta (84.06 Mb)
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Title Blastx annotation and expression levels
Downloaded 12 times
Description Transcriptomic contig Blastx-based annotations and expression levels
Download blastxAnnotationAndExpressionLevels.txt (6.410 Mb)
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Title Blastp annotation and expression levels
Downloaded 12 times
Description Transcriptomic contig Blastp-based annotations and expression levels
Download blastpAnnotationAndExpressionLevels.txt (5.379 Mb)
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Title Transcriptomic contig expression levels
Downloaded 6 times
Description Expression levels of the transcriptomic contigs based on the alignment of the non-normalised cDNA library sequence reads against the assembled transcriptome.
Download nonNormalizedExpressionLevels.txt (2.957 Mb)
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Title normalizedExpressionLevels
Downloaded 8 times
Description Expression levels of the transcriptomic contigs after normalisation of the cDNA library
Download normalizedExpressionLevels.txt (2.938 Mb)
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Title Blastx-based annotation (green plants) and expression levels
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Description Transcriptomic contig Blastx-based annotations using green-plant Swiss-prot accessions and expression levels
Download blastxExpressionLevels.txt (3.787 Mb)
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Title Blastp annotation (green plants) and expression levels
Downloaded 11 times
Description Transcriptomic contig Blastp-based annotations using green-plant Swiss-prot accessions and expression levels
Download blastpExpressionLevels.txt (3.084 Mb)
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Title Transcriptomic contig expression levels (no isoforms)
Downloaded 11 times
Description Expression levels of the transcriptomic contigs (no isoforms) based on the alignment of the non-normalised cDNA library sequence reads against the assembled transcriptome.
Download nonNormalizedExpressionLevels.txt (2.054 Mb)
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Title Transcriptomic contig normalized expression levels (no isoforms)
Downloaded 9 times
Description Expression levels of the transcriptomic contigs (no isoforms) after normalisation of the cDNA library.
Download normalizedExpressionLevels.txt (2.042 Mb)
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Title Transcriptome coding sequences
Downloaded 3 times
Description Coding sequences derived from the transcriptome contigs using TransDecoder software
Download transcriptomeORFs.cds (43.12 Mb)
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Title Translated transcriptome coding sequences
Downloaded 2 times
Description Amino acid sequences obtained through translation of the transcriptome coding sequences
Download transcriptomeORFs.pep (18.34 Mb)
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Almeida-Val VMF, Boscari E, Coelho MM, Congiu L, Grapputo A, Grosso AR, Jesus TF, Luebert F, Mansion G, Muller LAH, Demet T, Vidotto M, Zane L (2015) Genomic Resources Notes accepted 1 April 2015 – 31 May 2015. Molecular Ecology Resources 15(5): 1256–1257. http://dx.doi.org/10.1111/1755-0998.12439

Additionally, please cite the Dryad data package:

Demet T, Luebert F, Mansion G, Muller LAH (2015) Data from: "Transcriptome sequences for Campanula gentilis" in Genomic Resources Notes accepted 1 April 2015 – 31 May 2015. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1hj3m
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