Data from: In the shadows: phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus)

Domingos FMCB, Colli GR, Lemmon A, Lemmon EM, Beheregaray LB

Date Published: December 13, 2016

DOI: http://dx.doi.org/10.5061/dryad.1hs2m

 

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Title AHE_BPP_alignments
Description Text file containing the alignments of all captured AHE loci used in the BPP analyses
Download AHE_BPP_alignments.txt (17.76 Mb)
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Title AHE_concatenated_alignment_partitions
Description Partitions of the AHE concatenated dataset used in phylogenetic analyses, as estimated by PartitionFinder2
Download AHE_concatenated_alignment_partitions.part (4.753 Mb)
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Title AHE_concatenated_alignment
Description Phylip file with concatenated AHE loci used in phylogenetic analyses
Download AHE_concatenated_alignment.phy (18.25 Mb)
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Title Cytb_aligment
Description Phylip file with cytb alignments
Download Cytb_aligment.phy (86.63 Kb)
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When using this data, please cite the original publication:

Domingos FMCB, Colli GR, Lemmon A, Lemmon EM, Beheregaray LB (2017) In the shadows: phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus). Molecular Phylogenetics and Evolution 107: 455–465. http://dx.doi.org/10.1016/j.ympev.2016.12.009

Additionally, please cite the Dryad data package:

Domingos FMCB, Colli GR, Lemmon A, Lemmon EM, Beheregaray LB (2016) Data from: In the shadows: phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1hs2m
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