Data from: Sexual dimorphism and retinal mosaic diversification following the evolution of a violet receptor in butterflies

McCulloch KJ, Yuan F, Zhen Y, Aardema ML, Smith G, Llorente-Bousquets J, Andolfatto P, Briscoe AD

Date Published: May 18, 2017

DOI: http://dx.doi.org/10.5061/dryad.1j1f3

 

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Title Sequence alignment fasta files of 634 loci from 5 Heliconius species
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Description This is a compressed directory of 634 anonymous loci obtained from RNA-Seq data and aligned for phylogenetic analysis. The data come from 5 Heliconius species: Heliconius melpomene, Heliconius erato, Heliconius sara, Heliconius doris, and Heliconius charithonia. Briefly, we performed Illumina RNA sequencing followed by de novo transcriptome assembly. BLAST was used to determine orthology across species and the selected loci were aligned using Clustal W. This file contains the final 634 loci used to reconstruct the Heliconius phylogeny. The file is a zipped directory containing each locus as a separate aligned fasta file. File names include the original (arbitrary) locus number and the length of the locus, but loci themselves are anonymous (i.e., are not annotated/named). Each file contains 5 sequences labelled as so: char (Heliconius charithonia), dori (Heliconius doris), erat (Heliconius erato), melp (Heliconius melpomene), sara (Heliconius sara). See publication Methods section for a more detailed description of methodology.
Download Dryad_submission_of_634_aligned_RNAseq_lo...us.zip (883.7 Kb)
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When using this data, please cite the original publication:

McCulloch KJ, Yuan F, Zhen Y, Aardema ML, Smith G, Llorente-Bousquets J, Andolfatto P, Briscoe AD (2017) Sexual Dimorphism and Retinal Mosaic Diversification Following the Evolution of a Violet Receptor in Butterflies. Molecular Biology and Evolution, online in advance of print. http://dx.doi.org/10.1093/molbev/msx163

Additionally, please cite the Dryad data package:

McCulloch KJ, Yuan F, Zhen Y, Aardema ML, Smith G, Llorente-Bousquets J, Andolfatto P, Briscoe AD (2017) Data from: Sexual dimorphism and retinal mosaic diversification following the evolution of a violet receptor in butterflies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1j1f3
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