Data from: Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples

Galan M, Pagès M, Cosson J

Date Published: February 5, 2013

DOI: http://dx.doi.org/10.5061/dryad.1j6v6

 

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Title Fasta S1 COI115Species from GenBank
Downloaded 30 times
Description Alignment of COI sequences from 115 rodent species from GenBank
Download Fasta S1 COI115Species from GenBank.fas (80.67 Kb)
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Title Fasta S2 Cytb115Species from GenBank
Downloaded 24 times
Description Alignment of cytb sequences from 115 rodent species from GenBank
Download Fasta S2 Cytb115Species from GenBank.fas (139.4 Kb)
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Title Fasta S3 Design primers
Downloaded 31 times
Download Fasta S3 Design primers.fasta (12.11 Mb)
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Title Fasta S4 Reference Samples
Downloaded 21 times
Description Alignment of rodent haplotypes obtained from the 265 reference samples
Download Fasta S4 Reference Samples.fas (46.85 Kb)
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Title Fasta S5 Rodentia Haplotypes
Downloaded 22 times
Description Alignment of the rodent haplotypes obtained for ethanol preserved samples
Download Fasta S5 Rodentia Haplotypes.fas (62.85 Kb)
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Title Fasta S6 Prey Haplotypes
Downloaded 21 times
Description Alignment of the prey haplotypes obtained from faecal and pellet samples
Download Fasta S6 Prey Haplotypes.fas (6.395 Kb)
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Title Fasta S7 Museum Murinae True Haplotypes
Downloaded 11 times
Description Alignment of the rodent haplotypes obtained from museum samples
Download Fasta S7 Museum Murinae True Haplotypes.fas (4.947 Kb)
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Title Fasta S8 Museum Human DNA contamination Haplotypes
Downloaded 17 times
Description Alignment of the human haplotypes retrieved from rodent museum sample analysis
Download Fasta S8 Museum Human DNA contamination H...es.fas (2.973 Kb)
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Title Fasta S9 Museum DNA contamination Haplotypes
Downloaded 20 times
Description Alignment of the vertebrate haplotypes corresponding to contaminations detected in rodent museum samples
Download Fasta S9 Museum DNA contamination Haplotypes.fas (13.27 Kb)
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Title Fasta S10 Predator Haplotypes
Downloaded 14 times
Description Alignment of the predator haplotypes detected in faecal and pellet samples
Download Fasta S10 Predator Haplotypes.fas (1.025 Kb)
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Title Fatsa S11 Environnemental contamination Haplotypes
Downloaded 15 times
Description Alignment of the bacterial and unknown haplotypes detected in faecal and pellet samples
Download Fatsa S11 Environnemental contamination H...es.fas (722 bytes)
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When using this data, please cite the original publication:

Galan M, Pagès M, Cosson J (2013) Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples. PLoS ONE 7(11): e48374. http://dx.doi.org/10.1371/journal.pone.0048374

Additionally, please cite the Dryad data package:

Galan M, Pagès M, Cosson J (2012) Data from: Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1j6v6
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