Data from: Phylogenetic reconstruction of the Legionella pneumophila Philadelphia-1 laboratory strains through comparative genomics.

Rao C, Benhabib H, Ensminger AW

Date Published: May 24, 2013

DOI: http://dx.doi.org/10.5061/dryad.1k1ns

 

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Title Legionella pneumophila Philadelphia-1 clinical genome (GenBank format)
Downloaded 42 times
Description GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Corrects several discrepancies between the 1976 Philadelphia isolate given to the Isberg laboratory by Barry Fields and the original sequence.
Download Phila1_updated.gbk (7.310 Mb)
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Title Lp01 "core" genome (GenBank format)
Downloaded 30 times
Description GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Lp01 is a common laboratory strain, a streptomycin resistant, restriction-minus derivative of the Philadelphia-1 clinical strain. This "core" sequence reflects the genome of the original Lp01 isolate, calculated based on the phylogeny between contemporary Lp01 strains and Lp02.
Download Lp01_core.gbk (7.210 Mb)
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Title Lp01-CR genome (GenBank format)
Downloaded 15 times
Description GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Lp01 is a common laboratory strain. This Lp01-CR sequence reflects the genome of the Lp01 isolate in Chitong Rao's strain collection.
Download Lp01_CR.gbk (7.210 Mb)
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Title Lp02-AWE genome (GenBank format)
Downloaded 75 times
Description GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Lp02 is a thymidine auxotroph, derived from Lp01 by trimethoprim selection. This sequence reflects the genome of the original Lp02 isolate in Alexander Ensminger's strain collection.
Download Lp02_AWE.gbk (7.211 Mb)
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Title Lp03-AWE genome (GenBank format)
Downloaded 22 times
Description GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). Lp03 is a dotA mutant, derived from a thymidine auxotroph, originally thought to be Lp02. This sequence reflects the genome of the Lp03 isolate in Alexander Ensminger's strain collection.
Download Lp03_AWE.gbk (7.208 Mb)
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Title JR32-AWE (GenBank format)
Downloaded 31 times
Description GenBank formatted file derived from editing NC_002942 (Legionella pneumophila subsp. pneumophila str. Philadelphia 1). JR32 is a common laboratory strain, a streptomycin resistant, restriction-minus derivative of the Philadelphia-1 clinical strain. This sequence reflects the genome of the JR32 isolate in Alexander Ensminger's strain collection.
Download JR32_AWE.gbk (7.171 Mb)
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When using this data, please cite the original publication:

Rao C, Benhabib H, Ensminger AW (2013) Phylogenetic reconstruction of the Legionella pneumophila Philadelphia-1 laboratory strains through comparative genomics. PLoS ONE 8(5): e64129. http://dx.doi.org/10.1371/journal.pone.0064129

Additionally, please cite the Dryad data package:

Rao C, Benhabib H, Ensminger AW (2013) Data from: Phylogenetic reconstruction of the Legionella pneumophila Philadelphia-1 laboratory strains through comparative genomics. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1k1ns
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