Data from: Retrotransposon proliferation coincident with the evolution of dioecy in asparagus

Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J

Date Published: July 5, 2016

DOI: http://dx.doi.org/10.5061/dryad.1k450

 

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Title Asparagus officinalis RepeatMasker database
Downloaded 6 times
Description This fasta file contains a custom garden asparagus RepeatMasker database. A total of 893,623 454 FLX Titanium reads were generated from leaf tissue of a doubled haploid (YY) garden asparagus individual. Reads were stringently filtered to a 150nt minimum length. RepeatExplorer was then run, and the resulting cap3 consensus assemblies for each cluster were annotated using RepeatClassifier, part of the RepeatModeler (v1.0.8) suite, with default settings. A total of 22,361 sequences greater than 150nt in length and with annotations.
Download Asparagus.repeatexplorer.annotatedRepeats.fa (25.75 Mb)
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Title Asparagus genus 454 reads
Downloaded 4 times
Description This tar.bz2 file contains 454 sequencing fasta files for A. aphyllus, A. asparagoides, A. densiflorus, A. falcatus, A. maritimus, A. officinalis, A. pyrimidalis, A. stipularis, and A. virgatus. There is an additional A. officinalis 454 dataset that is significantly higher coverage, named "A_officinalis_WGS_in.454.AdditionalHighCoverage.fasta".
Download Asparagus_454_wgs.tar.bz2 (187.7 Mb)
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When using this data, please cite the original publication:

Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J (2016) Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus. G3: Genes - Genomes - Genetics 6(9): 2679-2685. http://dx.doi.org/10.1534/g3.116.030239

Additionally, please cite the Dryad data package:

Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J (2016) Data from: Retrotransposon proliferation coincident with the evolution of dioecy in asparagus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1k450
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