Data from: Complex genetic effects on early vegetative development shape resource allocation differences between Arabidopsis lyrata populations

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title NC field site data
Downloaded 66 times
Description Measurement data from the NC field site, including samples from four populations and F1/F2 progeny from Spiterstulen-Mayodan cross. Column headings are explained in ReadMe file.
Download FieldDataNCCombined.csv (135.5 Kb)
Download README.txt (23.02 Kb)
Details View File Details
Title QTL analysis data from North Carolina field site
Downloaded 54 times
Description Marker and trait data for F2 progeny from Spiterstulen-Mayodan cross grown at NC field site. Data are formatted for reading into R/qtl. Detailed explanation of column headings is in ReadMe file.
Download Alyrata1105DataF2RqtlE.csv (156.3 Kb)
Download README.txt (23.02 Kb)
Details View File Details
Title QTL analysis data from Norway field site
Downloaded 52 times
Description Marker and trait data for F2 progeny from Spiterstulen-Mayodan cross grown at Norway field site. Data are formatted for reading into R/qtl. Detailed explanation of column headings is in ReadMe file.
Download SpMaNorwayDec2010G.csv (185.6 Kb)
Download README.txt (23.02 Kb)
Details View File Details
Title Scripts for NC field data analysis
Downloaded 87 times
Description This file contains the R scripts used for analysis of the NC field data (non-QTL analyses). Use of the various scripts is described in comment lines within the file. Some of the scripts require loading the lme4 and Hmisc packages.
Download FieldDataScripts_NC_GeneticsMs.R (14.58 Kb)
Details View File Details
Title QTL analysis scripts for North Carolina data
Downloaded 49 times
Description This file contains the R scripts used for QTL analysis of the F2 data from the NC field site. Use of the various scripts is described in comment lines within the file. Scripts require loading the qtl package for R.
Download QTLScripts_NC_GeneticsMs.R (15.70 Kb)
Details View File Details
Title QTL analysis scripts for Norway data
Downloaded 32 times
Description This file contains the R scripts used for QTL analysis of the F2 data from the Norway field site. Use of the various scripts is described in comment lines within the file. Scripts require loading the qtl package for R.
Download QTLScripts_Norway_GeneticsMs.R (17.35 Kb)
Details View File Details
Title SEM analysis scripts for North Carolina data
Downloaded 39 times
Description This file contains the R scripts used for structural equation model (SEM) analysis of the F2 data from the NC field site. Use of the various scripts is described in comment lines within the file. Scripts require loading the sem package for R, and prior generation of the R/qtl object for these data.
Download SEMScripts_NC_GeneticsMs.R (12.45 Kb)
Details View File Details
Title SEM analysis scripts for Norway data
Downloaded 32 times
Description This file contains the R scripts used for structural equation model (SEM) analysis of the F2 data from the Norway field site. Use of the various scripts is described in comment lines within the file. Scripts require loading the sem package for R, and prior generation of the R/qtl object for these data.
Download SEMScripts_Norway_GeneticsMs.R (14.18 Kb)
Details View File Details

When using this data, please cite the original publication:

Remington DL, Leinonen PH, Leppälä J, Savolainen O (2013) Complex genetic effects on early vegetative development shape resource allocation differences between Arabidopsis lyrata populations. Genetics 195(3): 1087-1102. http://dx.doi.org/10.1534/genetics.113.151803

Additionally, please cite the Dryad data package:

Remington DL, Leinonen PH, Leppälä J, Savolainen O (2013) Data from: Complex genetic effects on early vegetative development shape resource allocation differences between Arabidopsis lyrata populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1k4gq
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: