Data from: Y-chromosome structural diversity in the bonobo and chimpanzee lineages

Oetjens MT, Shen F, Emery SB, Zou Z, Kidd JM

Date Published: July 1, 2016

DOI: http://dx.doi.org/10.5061/dryad.1kr29

 

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Title HGDP00222
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Download HGDP00222.vcf (421.8 Mb)
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Title chimp-Y.annotated.kmer
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Description Files accompanying "Y-chromosome structural diversity in the bonobo and chimpanzee lineages" by Oetjens et al. 2016 chimpY and humanY .kmer files are bed files of k-mers referenced in the manuscript used for calculating depth of Y-amplicons. Positions refer to panTro4 and hg19 coordinates for chimp and human k-mers respectively. column 1: chromosome column 2: k-mer start column 3: k-mer end column 4: k-mer sequence column 5: annotation
Download chimp-Y.annotated.kmer (521.6 Mb)
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Title humanY.annotated.ddPCR.kmer
Downloaded 1 time
Description Files accompanying "Y-chromosome structural diversity in the bonobo and chimpanzee lineages" by Oetjens et al. 2016 chimpY and humanY .kmer files are bed files of k-mers referenced in the manuscript used for calculating depth of Y-amplicons. Positions refer to panTro4 and hg19 coordinates for chimp and human k-mers respectively. column 1: chromosome column 2: k-mer start column 3: k-mer end column 4: k-mer sequence column 5: annotation
Download humanY.annotated.ddPCR.kmer (560.9 Mb)
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Title chimpAndBonobo.vcf
Downloaded 5 times
Description VCF files chimpAndBonobo.vcf and HGDP00222.vcf are the final filtered VCF files ( 4.2 Mb of callable sequence).
Download chimpAndBonobo.vcf.gz (231.1 Mb)
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When using this data, please cite the original publication:

Oetjens MT, Shen F, Emery SB, Zou Z, Kidd JM. (2016) Y-chromosome structural diversity in the bonobo and chimpanzee lineages. Genome Biology and Evolution 8(7): 2231-2240. http://dx.doi.org/10.1093/gbe/evw150

Additionally, please cite the Dryad data package:

Oetjens MT, Shen F, Emery SB, Zou Z, Kidd JM (2016) Data from: Y-chromosome structural diversity in the bonobo and chimpanzee lineages. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1kr29
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