Data from: Fat, fibre and cancer risk in African Americans and rural Africans

O’Keefe SJD, Li JV, Lahti L, Ou J, Carbonero F, Khaled M, Posma JM, Kinross J, Wahl E, Ruder E, Vipperla K, Naidoo V, Mtshali L, Tims S, Puylaert PGB, DeLany J, Krasinskas A, Benefiel AC, Kaseb HO, Newton K, Nicholson JK, de Vos WM, Gaskins HR, Zoetendal EG

Date Published: April 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.1mn1n

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title HITChip data matrix
Downloaded 32 times
Description A csv file containing HITChip phylogenetic microarray data matrix for the study samples. The data provides the absolute HITChip phylogenetic microarray signal estimate for 130 genus-like groups, preprocessed as described in the main article.
Download HITChip.csv (492.9 Kb)
Details View File Details
Title Metadata
Downloaded 17 times
Description CSV file containing the sample metadata in the HITChip data matrix. The variables are rounded or aggregated to ensure subject anonymity. 'NA' refers to missing values. The variable units and other information are as follows: - SampleID: unique sample identified corresponding to samples in the HITChip data matrix - subject: Subject identifier (some subjects have multiple time points) - bmi: Standard body-mass classification (underweight: <18.5; lean: 18.5-25; overweight: 25-30; obese: 30-35; severe obese: 35-40; morbid obese 40-45; superobese >45). - sex (male/female) - nationality: African American (AAM); Native African (AFR) - timepoint.group: Time point (1/2) within the group (ED/HE/DI) - timepoint.total: Time point in the overall data set (ED1 - HE1 -HE2 - DI1 - DI2 - ED2 ie. 1- 2- 3- 4- 5- 6) - group: Sample treatment group: as described in the main article; Dietary intervention (DI) / Home environment (HE) / Solid stool pre-colonoscopy (ED)
Download Metadata.csv (8.709 Kb)
Details View File Details
Title NMR data
Downloaded 79 times
Download JKNCRC_JLI121127_Okeefe.zip (108.4 Mb)
Details View File Details

When using this data, please cite the original publication:

O’Keefe SJD, Li JV, Lahti L, Ou J, Carbonero F, Khaled M, Posma JM, Kinross J, Wahl E, Ruder E, Vipperla K, Naidoo V, Mtshali L, Tims S, Puylaert PGB, DeLany J, Krasinskas A, Benefiel AC, Kaseb HO, Newton K, Nicholson JK, de Vos WM, Gaskins HR, Zoetendal EG (2015) Fat, fibre and cancer risk in African Americans and rural Africans. Nature Communications 6: 6342. http://dx.doi.org/10.1038/ncomms7342

Additionally, please cite the Dryad data package:

O’Keefe SJD, Li JV, Lahti L, Ou J, Carbonero F, Khaled M, Posma JM, Kinross J, Wahl E, Ruder E, Vipperla K, Naidoo V, Mtshali L, Tims S, Puylaert PGB, DeLany J, Krasinskas A, Benefiel AC, Kaseb HO, Newton K, Nicholson JK, de Vos WM, Gaskins HR, Zoetendal EG (2015) Data from: Fat, fibre and cancer risk in African Americans and rural Africans. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1mn1n
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: