Data from: Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in Southeast Asia

Ohtani M, Kondo T, Tani N, Ueno S, Lee S, Ng KKS, Muhammad N, Finkeldey R, Na'iem M, Indrioko S, Kamiya K, Harada K, Diway B, Khoo E, Kawamura K, Tsumura Y

Date Published: January 11, 2013

DOI: http://dx.doi.org/10.5061/dryad.1mt1h

 

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Title EST-SSR genotypes
Downloaded 16 times
Description EST-SSR genotypes of 724 individuals of Shorea leprosula used in the publication. Samples were collected in the natural populations of Malay Peninsula, Sumatra and Borneo and a plantation forest in Java. The data are in a format suitable for the program GenAlEx (Peakall and Smouse 2006).
Download .genotypes.csv (171.9 Kb)
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Title chloroplast DNA sequences
Downloaded 6 times
Description Final DNA sequence assembly for the four noncoding chloroplast DNA regions of 177 individuals of Shorea leprosula used in the publication. Samples were collected in the natural populations of Malay Peninsula, Sumatra and Borneo and a plantation forest in Java.
Download .DRYADseqfin.nex (542.3 Kb)
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Title Sample locations
Downloaded 6 times
Description Locations of the 27 populations of Shorea leprosula and numbers of samples analyzed in the publication. The three populations in Sarawak has been excluded from our EST-SSR analysis due to their small sample sizes.
Download .poploc.fin.csv (1.953 Kb)
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Title IM input file
Downloaded 6 times
Description An input file for the analysis of an Isolation-with-migration model between the Malay/Sumatra and the Borneo population groups of Shorea leprosula, based on the polymorphisms in the four noncoding chloroplast DNA regions.
Download .inputfile.txt (488.2 Kb)
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Title IM setting file
Downloaded 1 time
Description Parameter setting for the analysis of an Isolation-with-migration model between the Malay/Sumatra and the Borneo population groups of Shorea leprosula, based on the polymorphisms in the four noncoding chloroplast DNA regions.
Download .settings.txt (201 bytes)
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When using this data, please cite the original publication:

Ohtani M, Kondo T, Tani N, Ueno S, Lee S, Ng KKS, Muhammad N, Finkeldey R, Na'iem M, Indrioko S, Kamiya K, Harada K, Diway B, Khoo E, Kawamura K, Tsumura Y (2013) Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in Southeast Asia. Molecular Ecology 22(8): 2264–2279. http://dx.doi.org/10.1111/mec.12243

Additionally, please cite the Dryad data package:

Ohtani M, Kondo T, Tani N, Ueno S, Lee S, Ng KKS, Muhammad N, Finkeldey R, Na'iem M, Indrioko S, Kamiya K, Harada K, Diway B, Khoo E, Kawamura K, Tsumura Y (2013) Data from: Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in Southeast Asia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1mt1h
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