Data from: Fold or hold: experimental evolution in vitro

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Roche SFF sequence files for all 16 Oli populations
Downloaded 27 times
Description These are the SFF files from Roche 454 titanium sequencing of the Oli populations. Populations were barcode indexed using the Roche MIDs, sequenced on the 454 titanium, base-called using the Roche pipeline version 2.53, then split into the 16 separate populations using the MID index. These sff files have been bzip2'ed into one tar archive for easier upload and download.
Download README.txt (1.091 Kb)
Download sff_files_from_all_16_oli_populations.tar.bz2 (287.5 Mb)
Details View File Details
Title Perl script to filter reads by start and end primer sequences
Downloaded 38 times
Description A Perl script to filter 454 reads by the start and end primer sequence. Input reads are in fasta format. Outputs several files for reads that match the primers, and reads that are too short or too long, or don't match.
Download filter_by_primers_for_Sinead_Collins.pl (16.93 Kb)
Details View File Details
Title Perl script to count unique sequences
Downloaded 14 times
Description Script to count unique sequences from fast input file, reverse complementing if necessary so forward primer is at start of the sequence.
Download count_unique_sequences_for_Sinead_Collins.pl (8.147 Kb)
Details View File Details
Title README
Downloaded 9 times
Description This Readme file gives details about the initial submission of manuscript to arXiv.org, before it subsequently accepted by the Journal of Evolutionary Biology.
Download README.txt (1.014 Kb)
Details View File Details

When using this data, please cite the original publication:

Collins S, Rambaut A, Bridgett SJ (2013) Fold or hold: experimental evolution in vitro. Journal of Evolutionary Biology 26(10): 2123–2134. http://dx.doi.org/10.1111/jeb.12233

Additionally, please cite the Dryad data package:

Collins S, Rambaut A, Bridgett SJ (2013) Data from: Fold or hold: experimental evolution in vitro. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1nt11
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: