Data from: Genetic consequences of post-glacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus

Jezkova T, Riddle BR, Card DC, Schield DR, Eckstut ME, Castoe TA

Date Published: November 26, 2014

DOI: http://dx.doi.org/10.5061/dryad.1nv6k

 

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Title Mitochondrial DNA - Dipodomys deserti
Downloaded 7 times
Description Mitochondrial DNA control region sequences, 1000 base pairs, Dipodomys deserti, fasta
Download D_deserti.fas (343.1 Kb)
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Title Mitochondrial DNA - Dipodomys merriami
Downloaded 5 times
Description Mitochondrial DNA control region sequences, 906 base pairs, Dipodomys merriami, fasta
Download D_merriami.fas (199.3 Kb)
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Title Dipodomys merriami and deserti Read Mapping Output Files
Downloaded 8 times
Description This compressed archive directory contains the mapping files for each individual Dipodomys sample used in the RADseq analysis. Each file is in a sorted BAM format, which can easily be converted to SAM or many other desirable formats. These files have been placed into directories that indicate what species (D. deserti or D. merriami) and population (North or South) the individual sample comes from.
Download Jezkova_2014_Dipodomys_Mapped_Reads.tar.bz2 (1.021 Gb)
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Title Dipodomys merriami and deserti Stacks Catalog Files
Downloaded 6 times
Description This compressed archive directory contains the complete catalog files for the entire Stacks analysis, including the batch catalog (batch_1...) and the individual sample catalog files (LVT...). All files are tab-delimited and are configured according to the pre-Stacks v. 1.20 formatting. File name extensions also reflect the Stacks naming scheme.
Download Jezkova_2014_Dipodomys_Stacks_Catalog.tar.bz2 (323.2 Mb)
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Title Dipodomys deserti Raw Sample Reads
Downloaded 8 times
Description This compressed archive contains individual Illumina read files for each Dipodomys deserti sample. These reads were generated by first excluding PCR clones and then parsing by unique barcodes.
Download Jezkova_2014_Dipodomys_deserti_Raw_Reads.tar.bz2 (763.7 Mb)
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Title Dipodomys merriami Raw Sample Reads
Downloaded 9 times
Description This compressed archive contains individual Illumina read files for each Dipodomys merriami sample. These reads were generated by first excluding PCR clones and then parsing by unique barcodes.
Download Jezkova_2014_Dipodomys_merriami_Raw_Reads.tar.bz2 (783.8 Mb)
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Title README_RADseq
Downloaded 15 times
Description Readme to accompany RADseq data.
Download README_RADseq.txt (2.212 Kb)
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When using this data, please cite the original publication:

Jezkova T, Riddle BR, Card DC, Schield DR, Eckstut ME, Castoe TA (2015) Genetic consequences of post-glacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus. Molecular Ecology 24(1): 83-97. http://dx.doi.org/10.1111/mec.13012

Additionally, please cite the Dryad data package:

Jezkova T, Riddle BR, Card DC, Schield DR, Eckstut ME, Castoe TA (2014) Data from: Genetic consequences of post-glacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1nv6k
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