Data from: Individual correlates of infectivity of influenza A virus infections in households

Tsang T, Fang V, Chan K, Ip D, Leung G, Peiris JS, Cowling B, Cauchemez S

Date Published: May 11, 2016

DOI: http://dx.doi.org/10.5061/dryad.1p3kn

 

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Title Read me (data file explanations)
Downloaded 22 times
Download readme.txt (3.08 Kb)
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Title Household data
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Description This data file contains information on the information recrutied from the household transmission study in Hong Kong, from 2008-2012.
Download data.csv (181.2 Kb)
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Title Influenza proxy data
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Description The influenza proxy used in the analysis. ( 1/1/2008 is set as Day 1)
Download ILILAB.csv (13.22 Kb)
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Title Scripts of log-linear random effects model
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Description R syntax to use log-linear random effects censored regression model to fix the observed viral shedding data and divide index cases into three viral shedding groups. This will create a data file [grouped_data.csv] for further analysis.
Download lmec regression.r (2.458 Kb)
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Title Regression model results
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Description The results generated from the above log-linear random effects censored regression model.
Download grouped_data.csv (251.4 Kb)
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Title Matlab function 1
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Description Contain the matlab function to generate results on the model in the main analysis.
Download Model_1.m (6.975 Kb)
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Title Matlab function 2
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Description Contain the matlab function to generate results on the additional analysis of exploring the effect of presence of symptom. (a to i respents fever, sore throat, cough, runny nose, phlegm, muscle pain, headache, any three or more of above symptoms and ILI (fever + cough or sough) ).
Download Model_2.m (8.226 Kb)
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Title Figure 1 scripts
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Title Table 1 scripts
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Title Table 2 scripts
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Title Table 3 scripts
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When using this data, please cite the original publication:

Tsang T, Fang V, Chan K, Ip D, Leung G, Peiris JS, Cowling B, Cauchemez S (2016) Individual correlates of infectivity of influenza A virus infections in households. PLOS ONE 11(5): e0154418. http://dx.doi.org/10.1371/journal.pone.0154418

Additionally, please cite the Dryad data package:

Tsang T, Fang V, Chan K, Ip D, Leung G, Peiris JS, Cowling B, Cauchemez S (2016) Data from: Individual correlates of infectivity of influenza A virus infections in households. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1p3kn
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