Data from: Testing for differences in rates of speciation, extinction, and morphological evolution in four tribes of cichlids endemic to Lake Tanganyika, East Africa

 

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Title Code for Speciation-based Model, MinMax variation
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Title Code for Speciation-based Model; No Condition, Extant, and Min variations
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Download Speciation_NoMax_Model.txt (5.982 Kb)
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Title Code for Time-based Model, MinMax variation
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Download Time_MinMax_Model.txt (6.016 Kb)
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Title Code for counting matches between simulated data and actual clade disparity
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Description This code (written in R) counts the number of simulations generated under each parameter combination that match the actual disparity of the real clade, within 1 standard error. In order to use this code, input the morphological variance of the real clade as “var” and the standard error of this variance as “SE” by replacing the example numbers. In the next line, input the file name of the data output from the simulations between the quotation marks by replacing the example file name (minmaxvar.txt). Finally, replace the output file name between the quotation marks in the last line by replacing the example output name (minmaxvarcount.xls).
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Title Morphometric data for East African Cichlids (Ectodini, Lamprologini, Tropheini, Cyprichromini, Perissodini, Limnochromini) downloaded from FishBase
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Description This spreadsheet contains the data downloaded from FishBase. Each species name also includes a link to the FishBase page for that species. The data is separated by tribe, and includes data for species from Ectodini, Lamprologini, Tropheini, Cyprichromini, Perissodini, and Limnochromini. The characters used include standard length (% total length), pre-anal length (% total length), pre-dorsal length (% total length), pre-pelvic length (% total length), pre-pectoral length (% total length), body depth (% total length), head length (% total length), eye diameter (% head length), pre-orbital length (% head length), and the aspect ratio (calculated as height squared divided by surface area) of the caudal fin.
Download FishBase_data_compilation.xlsx (19.59 Kb)
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Title Code for calculations for probability matrices and likelihood
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Download Matrixcalcs.txt (3.987 Kb)
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When using this data, please cite the original publication:

Hoerner ME (2011) Testing for differences in rates of speciation, extinction, and morphological evolution in four tribes of cichlids endemic to Lake Tanganyika, East Africa. Evolution 65(12): 3398-3412. http://dx.doi.org/10.1111/j.1558-5646.2011.01390.x

Additionally, please cite the Dryad data package:

Hoerner ME (2011) Data from: Testing for differences in rates of speciation, extinction, and morphological evolution in four tribes of cichlids endemic to Lake Tanganyika, East Africa. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1ps0t
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