Data from: Multiplexed shotgun genotyping resolves species relationships within the North American genus Penstemon

Wessinger CA, Freeman CC, Mort ME, Rausher MD, Hileman LC

Date Published: May 17, 2016

DOI: http://dx.doi.org/10.5061/dryad.1q8p3

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title species-codes
Downloaded 10 times
Description Guide to species codes in alignment files. All species are in the genus Penstemon. See our manuscript for accession information
Download species-codes.txt (1.856 Kb)
Details View File Details
Title full-s80t15
Downloaded 10 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 15. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s80t15.phy (60.39 Mb)
Details View File Details
Title full-s80t20
Downloaded 9 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 20. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s80t20.phy (42.42 Mb)
Details View File Details
Title full-s80t30
Downloaded 4 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 30. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s80t30.phy (23.13 Mb)
Details View File Details
Title full-s90t15
Downloaded 3 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 15. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s90t15.phy (50.71 Mb)
Details View File Details
Title full-s90t20
Downloaded 7 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 20. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s90t20.phy (33.24 Mb)
Details View File Details
Title full-s90t30
Downloaded 6 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 30. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s90t30.phy (16.98 Mb)
Details View File Details
Title full-s95t15
Downloaded 6 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 95% and minimum taxa per locus = 15. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s95t15.phy (33.81 Mb)
Details View File Details
Title full-s95t20
Downloaded 7 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 95% and minimum taxa per locus = 20. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s95t20.phy (20.17 Mb)
Details View File Details
Title full-s95t30
Downloaded 6 times
Description Aligned MSG-based data matrix for the full set of taxa, built under the following pyRAD parameters: similarity threshold = 95% and minimum taxa per locus = 30. A key to species codes is given in the separate file entitled species-codes.txt.
Download full-s95t30.phy (9.582 Mb)
Details View File Details
Title CG-s80t4
Downloaded 4 times
Description Aligned MSG-based data matrix for the set of taxa in the CG-clade, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 4. A key to species codes is given in the separate file entitled species-codes.txt.
Download CG-s80t4.phy (45.16 Mb)
Details View File Details
Title CG-s80t8
Downloaded 3 times
Description Aligned MSG-based data matrix for the set of taxa in the CG-clade, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 8. A key to species codes is given in the separate file entitled species-codes.txt.
Download CG-s80t8.phy (21.44 Mb)
Details View File Details
Title CG-s90t4
Description Aligned MSG-based data matrix for the set of taxa in the CG-clade, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 4. A key to species codes is given in the separate file entitled species-codes.txt.
Details View File Details
Title CG-s90t8
Description Aligned MSG-based data matrix for the set of taxa in the CG-clade, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 8. A key to species codes is given in the separate file entitled species-codes.txt.
Details View File Details
Title HS-s80t4
Description Aligned MSG-based data matrix for the set of taxa in the HS-clade, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 4. A key to species codes is given in the separate file entitled species-codes.txt.
Details View File Details
Title HS-s80t8
Description Aligned MSG-based data matrix for the set of taxa in the HS-clade, built under the following pyRAD parameters: similarity threshold = 80% and minimum taxa per locus = 8. A key to species codes is given in the separate file entitled species-codes.txt.
Details View File Details
Title HS-s90t4
Description Aligned MSG-based data matrix for the set of taxa in the HS-clade, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 4. A key to species codes is given in the separate file entitled species-codes.txt.
Details View File Details
Title HS-s90t8
Description Aligned MSG-based data matrix for the set of taxa in the HS-clade, built under the following pyRAD parameters: similarity threshold = 90% and minimum taxa per locus = 8. A key to species codes is given in the separate file entitled species-codes.txt.
Details View File Details

When using this data, please cite the original publication:

Wessinger CA, Freeman CC, Mort ME, Rausher MD, Hileman LC (2016) Multiplexed shotgun genotyping resolves species relationships within the North American genus Penstemon. American Journal of Botany 103(5): 912-922. http://dx.doi.org/10.3732/ajb.1500519

Additionally, please cite the Dryad data package:

Wessinger CA, Freeman CC, Mort ME, Rausher MD, Hileman LC (2016) Data from: Multiplexed shotgun genotyping resolves species relationships within the North American genus Penstemon. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1q8p3
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: