Data from: Chromatin is an ancient innovation conserved between Archaea and Eukarya

Ammar R, Torti D, Tsui K, Gebbia M, Durbic T, Bader GD, Giaever G, Nislow C

Date Published: December 19, 2012

DOI: http://dx.doi.org/10.5061/dryad.1qp42

 

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Title Haloferax volcanii reference genome
Description The Hfx. volcanii genome that we used to align reads
Download haloferax_volcanii_merge.fa (4.070 Mb)
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Title Haloferax nucleosome centre positions
Downloaded 2 times
Description Archaeal browser track with 1-based nucleosome centre positions, bed file
Download Archaeal_browser_track_2N.bed (1.526 Mb)
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Title Haloferax transcripts
Description Manually-curated transcripts based on RNA-seq data
Download transcripts_DSN_manually_curated.bed (199.7 Kb)
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Title Expression data for transcripts
Downloaded 1 time
Description FPKM and expression data for all transcripts
Download transcripts_expression_FPKM.txt (113.6 Kb)
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Title Nucleosome MNase-seq data aligned to Haloferax genome (BAM file)
Description Aligned nucleosome reads
Download hv-2N-sorted.bam (364.9 Mb)
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Title Control undigested data aligned to Haloferax genome (BAM file)
Description Crosslinked undigested DNA control
Download hv-2G-sorted.bam (128.4 Mb)
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Title Nucleosome MNase-seq data aligned to Haloferax genome (BAI file)
Download hv-2N-sorted.bai (12.27 Kb)
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Title Control undigested data aligned to Haloferax genome (BAI file)
Download hv-2G-sorted.bai (12.43 Kb)
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Title Control MNase-seq data aligned to Haloferax genome (BAM file PART1)
Description naked DNA control (MNase-seq)
Download hv-naked-sorted.bam_part1 (629.1 Mb)
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Title Control MNase-seq data aligned to Haloferax genome (BAM file PART2)
Description naked DNA control (MNase-seq)
Download hv-naked-sorted.bam_part2 (511.9 Mb)
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Title Control MNase-seq data aligned to Haloferax genome (BAI file)
Downloaded 1 time
Download hv-naked-sorted.bai (14.92 Kb)
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When using this data, please cite the original publication:

Ammar R, Torti D, Tsui K, Gebbia M, Durbic T, Bader GD, Giaever G, Nislow C (2012) Chromatin is an ancient innovation conserved between Archaea and Eukarya. eLife 1: e00078. http://dx.doi.org/10.7554/eLife.00078

Additionally, please cite the Dryad data package:

Ammar R, Torti D, Tsui K, Gebbia M, Durbic T, Bader GD, Giaever G, Nislow C (2012) Data from: Chromatin is an ancient innovation conserved between Archaea and Eukarya. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.1qp42
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