Data from: Evolutionary history of Lost World frogs (Ph.D. thesis)

Salerno PE

Date Published: October 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.202d4

 

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Title Scripts used for STACKS pipeline
Downloaded 5 times
Description These are the three final scripts used for generating the 5159 SNP matrix that was used as a basis for all other data matrices.
Download scripts_STACKS (442 bytes)
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Title Large SNP matrix without outlier
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Description This is the matrix used for analyses where all SNPs and taxa were used, excluding the outlier from the Auyan population that was found with the PCA analysis.
Download Snps_5159_no_outl.stru (1.997 Mb)
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Title Original 5159 SNP matrix
Downloaded 1 time
Description Original 5159 SNP matrix obtained in STACKS
Download Snps_5159.stru (2.018 Mb)
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Title Reduced 1000 SNP matrix
Downloaded 4 times
Description Reduced matrix, keeping all taxa but reducing SNPs to 1000
Download Snps_1000_no_outl.stru (390.3 Kb)
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Title Reduced 1219 SNP matrix
Downloaded 2 times
Description Matrix obtained after eliminating taxa with >30% missing data and SNPs with >6% missing data, resulting in a total of 1219 SNPs.
Download Snps_1219_no_outl.stru (324.6 Kb)
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When using this data, please cite the original publication:

Salerno PE (2014) Evolutionary history of Lost World frogs. Ph.D. thesis, University of Texas at Austin, Department of Ecology, Evolution and Behavior. http://www.worldcat.org/oclc/922004128.

Additionally, please cite the Dryad data package:

Salerno PE (2014) Data from: Evolutionary history of Lost World frogs (Ph.D. thesis). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.202d4
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