Data from: Constructing phylogenies in the presence of Intra-Individual Site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron

Potts AJ, Hedderson TA, Grimm GW

Date Published: August 5, 2013

DOI: http://dx.doi.org/10.5061/dryad.21jj2

 

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Title Online Appendix S1
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Description Supplementary Table
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Title Online Appendix S2
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Description Detailed methods description for simulation and real-world dataset analyses.
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Title Online Appendix S3
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Description Neighbour-Net networks with bootstrap bipartition support for a range of published datasets
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Title Simulation.datasets
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Description Datasets simulated to include polymorphism inheritance (using two independent copies or variants) and determine the effects of these polymorphisms on a range of phylogenetic inference methods.
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Title Real.world.datasets
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Description The real-world datasets plus outputted bootstrap trees used to test the effects of intra-individual site polymorphisms (2ISPs) on a range of phylogenetic methods
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Title Nymania.capensis.ITS.alignments
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Description The raw and edited alignments for the Nymania capensis alignment of DNA sequences from the internal transcribed spacers and 5.8S regions.
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When using this data, please cite the original publication:

Potts AJ, Hedderson TA, Grimm GW (2013) Constructing phylogenies in the presence of Intra-Individual Site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron. Systematic Biology 63(1): 1-16. http://dx.doi.org/10.1093/sysbio/syt052

Additionally, please cite the Dryad data package:

Potts AJ, Hedderson TA, Grimm GW (2013) Data from: Constructing phylogenies in the presence of Intra-Individual Site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.21jj2
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