Data from: A comparison of pedigree- and genetic-based measures for identifying inbreeding depression in the critically endangered Attwater’s Prairie-chicken

Hammerly SC, Morrow ME, Johnson JA

Date Published: August 14, 2013

DOI: http://dx.doi.org/10.5061/dryad.22g66

 

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Title Microsatellite genotypes for temporal Attwater Prairie-chicken populations
Downloaded 21 times
Description Genotypes for 5 microsatellite loci used to compare genetic diversity levels among historic (1887-1948), pre-captive (1990-94) and captive (2006) Attwater's Prairie-chicken populations.
Download APC_hist_and_contemp_5loci_genotypes.xlsx (47.10 Kb)
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Title mtDNA control region sequence alignment for temporal Attwater's Prairie-chicken populations
Downloaded 20 times
Description Mitochondrial control region domain I partial sequence alignment used to compare diversity levels among historic (1987-1948), pre-captive (1990-1994) and captive (2006) Attwater's Prairie-chicken populations.
Download Attwater_mtDNA_control_region_seq_alignment.nex (30.32 Kb)
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Title Microsatellite genotypes for the captive 2006 Attwater's Prairie-chicken population
Downloaded 18 times
Description Microsatellite genotypes (8 loci) from the captive Attwater's Prairie-chicken population used in the mixed model analyses. All living individuals in captivity as of March 2006 were sampled.
Download APC_adult_2006_8loci_genotypes.xlsx (25.99 Kb)
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Title SPSS input file for adult Attwater's Prairie-chicken Cox proportional hazards model analyses
Downloaded 10 times
Description SPSS input file used to conduct Cox proportional harzards model analyses to explore the effects of several potential explanatory variables simultaneously on juvenile (>8 months) and adult Attwater’s Prairie-chicken survival in captivity.
Download APC_adult_survival_Final.sav (33.74 Kb)
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Title SPSS input file for chick Attwater's Prairie-chicken Cox proportional harzards model analyses
Downloaded 12 times
Description SPSS input file used to conduct Cox proportional harzards model analyses to explore the effects of several potential explanatory variables simultaneously on Attwater’s Prairie-chicken chick survival in captivity to 14 and 50 days post-hatch.
Download APC_chick_survival_Final.sav (62.61 Kb)
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When using this data, please cite the original publication:

Hammerly SC, Morrow ME, Johnson JA (2013) A comparison of pedigree- and genetic-based measures for identifying inbreeding depression in the critically endangered Attwater’s Prairie-chicken. Molecular Ecology 22(21): 5313–5328. http://dx.doi.org/10.1111/mec.12482

Additionally, please cite the Dryad data package:

Hammerly SC, Morrow ME, Johnson JA (2013) Data from: A comparison of pedigree- and genetic-based measures for identifying inbreeding depression in the critically endangered Attwater’s Prairie-chicken. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.22g66
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