Data from: Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus

Gao S, Li Y, Gao J, Suo Y, Fu K, Li Y, Chen J

Date Published: August 4, 2014

DOI: http://dx.doi.org/10.5061/dryad.22v18

 

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Title Alignments of orthologous proteins
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Description Firstly, 1328 orthologous proteins were screened out among Curvualria lunata and other 11 close fungi including Bipolaris maydis, Setosphaeria turcica, Pyrenophora tritici-repentis, Phaeosphaeria nodorum, Cercospora zea-madis, Aspergillus flavus, Magnaporthe oryzae, Fusarium graminearum, Saccharomyces cerevisiae, and Ustilago maydis with a cutoff E value of 1e-20. Secondly, these orthologous proteins were aligned using Clustal W 2.1. Lastly, the aligned proteins were concatenated
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Title Phylogenetic tree
Downloaded 17 times
Description The concatenated amino acid sequences were used to create a neighbor-joining tree using TREE-PUZZLE program with the Dayhoff model. The divergence time between species was estimated using r8s software with the Langley-Fitch medel by calibrating with the origin of the Ascomycota at 500-650 million years ago.
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When using this data, please cite the original publication:

Gao S, Li Y, Gao J, Suo Y, Fu K, Li Y, Chen J (2014) Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus. BMC Genomics 15: 627. http://dx.doi.org/10.1186/1471-2164-15-627

Additionally, please cite the Dryad data package:

Gao S, Li Y, Gao J, Suo Y, Fu K, Li Y, Chen J (2014) Data from: Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.22v18
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