Data from: Complex patterns of host switching in New World Arenaviruses

 

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Title New World Arenavirus Z protein alignment
Downloaded 19 times
Description Alignment of the Z protein of 51 NWA sequences, labelled with Genbank accessions numbers.
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Title New World Arenavirus -L protein alignment
Downloaded 19 times
Description Alignment of the L protein of 37 NWA sequences, labelled with Genbank accessions numbers.
Download NWA-L.nex (267.4 Kb)
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Title New World Arenavirus -Nucleoprotien alignment
Downloaded 17 times
Description Alignment of the nucleoprotien of 64 NWA sequences, labelled with Genbank accessions numbers.
Download NWA-NP.nex (114.3 Kb)
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Title New World Arenavirus -Glycoprotein alignment
Downloaded 17 times
Description Alignment of the glycoprotein of 62 NWA sequences, labelled with Genbank accessions numbers.
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Title Sigmodontinae and Neotominae Mitochondria Cytochrome B alignment
Downloaded 28 times
Description Sigmodontinae and Neotominae Mitochondria Cytochrome B alignment. 523 taxa aligned with Genbank accession number and current taxonomy indicated for each sequence.
Download SigmodontinaeNeotominaeHosts_mt-cyb.phy (617.7 Kb)
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Title R script for phylogeneitcally informed mantel tests
Downloaded 172 times
Description Original R script provided by the authors of the following paper as supplementary material Harmon, L.J & Glor, R.E. (2010) This script has been modified by O.Missa to suit working from a genetic distance Matrix
Download phylo.perm.mantel.tests.txt (4.026 Kb)
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When using this data, please cite the original publication:

Irwin NR, Bayerlová M, Missa O, Martínková N (2012) Complex patterns of host switching in New World Arenaviruses. Molecular Ecology 21(16): 4137–4150. http://dx.doi.org/10.1111/j.1365-294X.2012.05663.x

Additionally, please cite the Dryad data package:

Irwin NR, Bayerlová M, Missa O, Martínková N (2012) Data from: Complex patterns of host switching in New World Arenaviruses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.231g746f
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