Data from: Paleo-drainage basin connectivity predicts evolutionary relationships across three southeast Asian biodiversity hotspots

de Bruyn M, Rüber L, Nylinder S, Stelbrink B, Lovejoy N, Lavoue S, Tan HH, Nugroho E, Wowor D, Ng P, Azizah S, von Rintelen T, Hall R, Carvalho G

Date Published: February 20, 2013

DOI: http://dx.doi.org/10.5061/dryad.23g44

 

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Title USYB-2012-210 Supp Data
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Title *Dermo_paleo
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Description xml file
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Title *Dermo_taxonomy
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Title *Hemir_paleo
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Title *Hemir_taxonomy
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Description xml file
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Title COI
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Description alignment
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Title ControlRegion
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Description alignment
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Title DP5
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Title DP14
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Description alignment
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Title DP21
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Description alignment
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Title DP35
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Description alignment
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Title DP37
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Title HP5
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Title HP54
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Description alignment
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Title HP56
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Description alignment
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Title debruynfigS1.pdf
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Description FIGURE S1. Temporal Dermogenys+Nomorhamphus dynamics among paleo-drainages.
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Title debruynfigS2
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Description FIGURE S2. Individual mitochondrial and nuclear gene trees for Dermogenys+Nomorhamphus and Hemirhamphodon.
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Title debruynfigS3
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Description FIGURE S3. Dermogenys+Nomorhamphus geographic range evolution.
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Title debruynfigS4
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Description FIGURE S4. Hemirhamphodon geographic range evolution.
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Title debruynfigS5
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Description FIGURE S5. Dermogenys+Nomorhamphus species tree based on taxonomy (A) (Collette 2004; Meisner 2001) and a priori paleo-drainage designation (B) (Voris 2000).
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Title debruynfigS6
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Description FIGURE S6. Hemirhamphodon species tree based on taxonomy (A) (Anderson and Collette 1991) and a priori paleo-drainage designation (B) (Voris 2000).
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Title debruynfigS7
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Description FIGURE S7. BEAST Analyses run with and without data to examine the influence of the priors. Solid lines are prior distributions, shadow densities are posteriors on 'empty' data.
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Title debruyntableS1
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Description TABLE S1. Sampling locations and sample information for this study.
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Title debruyntableS2
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Description TABLE S2. Genbank accession numbers for this study.
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Title debruyntableS3
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Description Table S3. mtDNA Control region: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS4
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Description Table S4. mtDNA COI: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS5
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Description Table S5. DP5: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS6
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Description Table S6 DP14: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS7
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Description Table S7. DP21: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS8
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Description Table S8. DP35: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS9
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Description Table S9. DP37: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS10
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Description Table S10. HP5: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS11
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Description Table S11. HP54: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS12
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Description Table S12. HP56: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS13
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Description TABLE S13. Dermogenys+Nomorhamphus geographic range evolution.
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Title debruyntableS14
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Description TABLE S14. Hemirhamphodon geographic range evolution.
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Title debruyntableS15
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Description TABLE S15. Bayes Factors (BF) of mtDNA Bayesian phylogeographic analyses of diffusion rates in Southeast Asian halfbeaks (Dermogenys+Nomorhamphus).
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Title debruyntableS16
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Description TABLE S16. Bayes Factors (BF) of mtDNA Bayesian phylogeographic analyses of diffusion rates in Southeast Asian halfbeaks (Hemirhamphodon).
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When using this data, please cite the original publication:

de Bruyn M, Rüber L, Nylinder S, Stelbrink B, Lovejoy N, Lavoue S, Tan HH, Nugroho E, Wowor D, Ng P, Azizah S, von Rintelen T, Hall R, Carvalho G (2013) Paleo-drainage basin connectivity predicts evolutionary relationships across three southeast Asian biodiversity hotspots. Systematic Biology 62(3): 398-410. http://dx.doi.org/10.1093/sysbio/syt007

Additionally, please cite the Dryad data package:

de Bruyn M, Rüber L, Nylinder S, Stelbrink B, Lovejoy N, Lavoue S, Tan HH, Nugroho E, Wowor D, Ng P, Azizah S, von Rintelen T, Hall R, Carvalho G (2013) Data from: Paleo-drainage basin connectivity predicts evolutionary relationships across three southeast Asian biodiversity hotspots. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.23g44
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