Data from: Paleo-drainage basin connectivity predicts evolutionary relationships across three southeast Asian biodiversity hotspots

de Bruyn M, Rüber L, Nylinder S, Stelbrink B, Lovejoy N, Lavoue S, Tan HH, Nugroho E, Wowor D, Ng P, Azizah S, von Rintelen T, Hall R, Carvalho G

Date Published: February 20, 2013

DOI: http://dx.doi.org/10.5061/dryad.23g44

 

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Title USYB-2012-210 Supp Data
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Title *Dermo_paleo
Description xml file
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Title *Dermo_taxonomy
Description xml file
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Title *Hemir_paleo
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Title *Hemir_taxonomy
Description xml file
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Title COI
Description alignment
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Title ControlRegion
Description alignment
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Title DP5
Description alignment
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Title DP14
Description alignment
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Title DP21
Description alignment
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Title DP35
Description alignment
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Title DP37
Description alignment
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Title HP5
Description alignment
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Title HP54
Description alignment
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Title HP56
Downloaded 1 time
Description alignment
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Title debruynfigS1.pdf
Description FIGURE S1. Temporal Dermogenys+Nomorhamphus dynamics among paleo-drainages.
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Title debruynfigS2
Description FIGURE S2. Individual mitochondrial and nuclear gene trees for Dermogenys+Nomorhamphus and Hemirhamphodon.
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Title debruynfigS3
Description FIGURE S3. Dermogenys+Nomorhamphus geographic range evolution.
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Title debruynfigS4
Description FIGURE S4. Hemirhamphodon geographic range evolution.
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Title debruynfigS5
Description FIGURE S5. Dermogenys+Nomorhamphus species tree based on taxonomy (A) (Collette 2004; Meisner 2001) and a priori paleo-drainage designation (B) (Voris 2000).
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Title debruynfigS6
Description FIGURE S6. Hemirhamphodon species tree based on taxonomy (A) (Anderson and Collette 1991) and a priori paleo-drainage designation (B) (Voris 2000).
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Title debruynfigS7
Description FIGURE S7. BEAST Analyses run with and without data to examine the influence of the priors. Solid lines are prior distributions, shadow densities are posteriors on 'empty' data.
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Title debruyntableS1
Downloaded 1 time
Description TABLE S1. Sampling locations and sample information for this study.
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Title debruyntableS2
Downloaded 1 time
Description TABLE S2. Genbank accession numbers for this study.
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Title debruyntableS3
Description Table S3. mtDNA Control region: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS4
Description Table S4. mtDNA COI: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS5
Description Table S5. DP5: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS6
Description Table S6 DP14: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS7
Description Table S7. DP21: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS8
Description Table S8. DP35: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS9
Description Table S9. DP37: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS10
Description Table S10. HP5: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS11
Description Table S11. HP54: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS12
Description Table S12. HP56: Maximum Likelihood fits of 24 different nucleotide substitution models
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Title debruyntableS13
Description TABLE S13. Dermogenys+Nomorhamphus geographic range evolution.
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Title debruyntableS14
Description TABLE S14. Hemirhamphodon geographic range evolution.
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Title debruyntableS15
Description TABLE S15. Bayes Factors (BF) of mtDNA Bayesian phylogeographic analyses of diffusion rates in Southeast Asian halfbeaks (Dermogenys+Nomorhamphus).
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Title debruyntableS16
Description TABLE S16. Bayes Factors (BF) of mtDNA Bayesian phylogeographic analyses of diffusion rates in Southeast Asian halfbeaks (Hemirhamphodon).
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When using this data, please cite the original publication:

de Bruyn M, Rüber L, Nylinder S, Stelbrink B, Lovejoy N, Lavoue S, Tan HH, Nugroho E, Wowor D, Ng P, Azizah S, von Rintelen T, Hall R, Carvalho G (2013) Paleo-drainage basin connectivity predicts evolutionary relationships across three southeast Asian biodiversity hotspots. Systematic Biology 62(3): 398-410. http://dx.doi.org/10.1093/sysbio/syt007

Additionally, please cite the Dryad data package:

de Bruyn M, Rüber L, Nylinder S, Stelbrink B, Lovejoy N, Lavoue S, Tan HH, Nugroho E, Wowor D, Ng P, Azizah S, von Rintelen T, Hall R, Carvalho G (2013) Data from: Paleo-drainage basin connectivity predicts evolutionary relationships across three southeast Asian biodiversity hotspots. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.23g44
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