Data from: Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores

Lonsinger RC, Gese EM, Dempsey SJ, Kluever BM, Waits LP

Date Published: December 4, 2014

DOI: http://dx.doi.org/10.5061/dryad.23k27

 

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Title DepositionAnalysis
Downloaded 4 times
Description R Script for generalized linear model and contrast analysis for scat accumulation samples collected from September 2012 to July 2012 at Dugway Proving Ground, Utah.
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Title dep.data
Downloaded 3 times
Description Raw data for scat accumulation surveys used in the generalized linear model and contrast analyses. Data collected from September 2012 to July 2012 at Dugway Proving Ground, Utah.
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Title kitfoxes
Downloaded 4 times
Description Raw DNA degradation data for kit fox faecal DNA samples used in the mixed-effects logistic regression models for PCR success, allelic dropout (ADO) and false alleles (FA). Faecal DNA samples collected in 2012 during winter and summer at Dugway Proving Ground, Utah. (Coding: 1 indicates successful PCR amplification, presence of ADO, or presence of FA; 0 indicates failed PCR amplification, no detection of ADO, or no detection of FA)
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Title coyotes
Downloaded 4 times
Description Raw DNA degradation data for coyote faecal DNA samples used in the mixed-effects logistic regression models for PCR success, allelic dropout (ADO) and false alleles (FA). Faecal DNA samples collected in 2012 during winter and summer at Dugway Proving Ground, Utah. (Coding: 1 indicates successful PCR amplification, presence of ADO, or presence of FA; 0 indicates failed PCR amplification, no detection of ADO, or no detection of FA)
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Title loci
Downloaded 3 times
Description Data on average locus lengths for kit fox and coyote faecal DNA samples used in the mixed-effects logistic regression models for PCR success, allelic dropout (ADO) and false alleles (FA). Faecal DNA samples collected in 2012 during winter and summer at Dugway Proving Ground, Utah.
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Title pcr
Downloaded 26 times
Description SAS script for the mixed-effects logistic regression models of PCR success for coyote and kit fox faecal DNA samples collected in 2012 during winter and summer at Dugway Proving Ground, Utah.
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Title ado
Downloaded 8 times
Description SAS script for the mixed-effects logistic regression models of allelic dropout for coyote and kit fox faecal DNA samples collected in 2012 during winter and summer at Dugway Proving Ground, Utah.
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Title fa
Downloaded 3 times
Description SAS script for the mixed-effects logistic regression models of false alleles for coyote and kit fox faecal DNA samples collected in 2012 during winter and summer at Dugway Proving Ground, Utah.
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When using this data, please cite the original publication:

Lonsinger RC, Gese EM, Dempsey SJ, Kluever BM, Johnson TR, Waits LP (2015) Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores. Molecular Ecology Resources 15(4): 831-842. http://dx.doi.org/10.1111/1755-0998.12356

Additionally, please cite the Dryad data package:

Lonsinger RC, Gese EM, Dempsey SJ, Kluever BM, Waits LP (2014) Data from: Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.23k27
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