Data from: Transcriptome-wide patterns of divergence during allopatric evolution

Pereira RJ, Barreto FS, Pierce NT, Carneiro M, Burton RS

Date Published: September 20, 2017

DOI: https://doi.org/10.5061/dryad.23s61

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Title gene_expression
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Description contains all FPKM estimates plus data for correlation between expression and divergence
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Title DoS
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Description contains complete list of polymorphisms (pN and pS) at coverage>20, and calculations of DoS
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Title dN_dS_omega
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Description dN, dS, omega per gene and per population comparison
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Title p_distances
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Description mitochondrial and nuclear genetic distances
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Title tree_files
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Description all tree bootstrapped ML trees and final tre file
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Title alignments
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Description alignments of mitochondrial and nuclear markers
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Title de_novo_assemblies
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Description complete (all assembled genes) and partial (orthologs only) de novo assemblies per population.
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Title polymorphisms
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Description polymorphism for coverage >8. Includes all bcf files and a Excel file with summaries and comparisons with polymorphisms from other species. To assess vcf files with polymorphisms with coverage >20 (after reads2snp), please contact the corresponding author (ricardojn.pereira@gmail.com).
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When using this data, please cite the original publication:

Pereira RJ, Barreto FS, Pierce NT, Carneiro M, Burton RS (2016) Transcriptome-wide patterns of divergence during allopatric evolution. Molecular Ecology 25(7): 1478-1493. https://doi.org/10.1111/mec.13579

Additionally, please cite the Dryad data package:

Pereira RJ, Barreto FS, Pierce NT, Carneiro M, Burton RS (2016) Data from: Transcriptome-wide patterns of divergence during allopatric evolution. Dryad Digital Repository. https://doi.org/10.5061/dryad.23s61
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