Data from: The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome

Moghadam HK, Harrison PW, Zachar G, Székely T, Mank JE

Date Published: February 26, 2013

DOI: http://dx.doi.org/10.5061/dryad.23vp5

 

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Title README
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Title Shorebird_Full_cDNA_Assembly.fasta
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Description This file holds all transcript assemblies generated through the trinity package (version 2012-01-25) (Grabherr et al. 2011) in fasta format.
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Title Shorebird_Count_Data_DESeq.txt
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Description This file holds the count data for all the transcripts with putative "avian origins" i.e., those contigs that have a 1:1 ortholog within the genomes of chicken and/or zebra finch. Differential gene expression was conducted using the R Bioconductor package, DESeq (version 10.1.1) (Anders & Huber 2010).
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Title Putative_Autosomal_SNP
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Description Contains the VCF files for all the putative autosomal SNPs.
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Title Putative_Z_SNP
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Description Contains the VCF files for all the putative Z-linked SNPs.
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Title Putative_Autosoma_SSR
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Description Contains the SSR information for all the putative autosomal transcripts.
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Title Putative_Z_SSR
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Description Contains the SSR information for all the putative Z-linked transcripts.
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When using this data, please cite the original publication:

Moghadam HK, Harrison PW, Zachar G, Székely T, Mank JE (2013) The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome. Molecular Ecology Resources 13(4): 696–705. http://dx.doi.org/10.1111/1755-0998.12096

Additionally, please cite the Dryad data package:

Moghadam HK, Harrison PW, Zachar G, Székely T, Mank JE (2013) Data from: The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.23vp5
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