Data from: When can clades be potentially resolved with morphology?

Bapst DW

Date Published: April 26, 2013

DOI: http://dx.doi.org/10.5061/dryad.25131

 

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Title tree_constant_07-15-12
Downloaded 27 times
Description R file for running the 'clade-constant' simulations as described in the paper.
Download tree_constant_07-15-12.R (28.60 Kb)
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Title ntaxa_constant_07-01-12
Downloaded 19 times
Description R script for the 'size-constant' simulations described in the paper.
Download ntaxa_constant_07-01-12.R (32.75 Kb)
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Title 100extant_07-28-12
Downloaded 42 times
Description R script file for simulations of extant only taxa.
Download 100extant_07-28-12.R (5.156 Kb)
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Title ratesVsResolved_anag_08-18-12
Downloaded 23 times
Description R script for simulations with varying sampling and differentiation rates under a pure-anagenesis model.
Download ratesVsResolved_anag_08-18-12.R (1.479 Kb)
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Title propDur_r0.01_09-15-12
Downloaded 24 times
Description R script simulating clades under various models of differentiation and estimating the proportion of taxa with an observable, sampled duration.
Download propDur_r0.01_09-15-12.R (7.228 Kb)
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Title modeComparison_propDur_workspace_09-16-12
Downloaded 18 times
Description An R workspace file containing all simulation data needed for plotting the figures where multiple models of differentiation are compared (Fig. 3-6, 8). Can be read into R with function load().
Download modeComparison_propDur_workspace_09-16-12.Rdata (153.3 Kb)
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Title ratesVresolved_08-16-12
Downloaded 22 times
Description An R workspace file containing all simulation data needed for plotting the results of the simulations comparing sampling and differentiation rates (i.e. Fig. 7). Can be read into R with function load().
Download ratesVresolved_08-16-12.Rdata (654.6 Kb)
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Title plotting_script
Downloaded 33 times
Description R plotting script for all supplemental figures and figures 3-6 of the main text.
Download plotting_script.R (18.04 Kb)
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Title plotting_anag_results_08-23-12
Downloaded 14 times
Description R file for plotting Figure 7 of the main text, which is the analysis comparing rates of sampling and differentiation.
Download plotting_anag_results_08-23-12.R (3.499 Kb)
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Title plot_propDur - 09-16-12
Downloaded 32 times
Description R script for plotting figure 8 from the main text.
Download plot_propDur - 09-16-12.R (1.525 Kb)
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When using this data, please cite the original publication:

Bapst DW (2013) When can clades be potentially resolved with morphology? PLoS ONE 8(4): e62312. http://dx.doi.org/10.1371/journal.pone.0062312

Additionally, please cite the Dryad data package:

Bapst DW (2013) Data from: When can clades be potentially resolved with morphology? Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.25131
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