Data from: Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids

Woodhouse MR, Tang H, Freeling M

Date Published: December 19, 2011

DOI: http://dx.doi.org/10.5061/dryad.275kv81m

 

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Title Arabidopsis Positional History Dataset
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Description Information includes chromosome start/stop, strand, duplicate state (parent=P, duplicate=AT number, or interrupter=I), TAIR9 gene description, the chromosomal position for each outgroup (-, S, G, FN, FB, F), the numerical synteny value for each chromosomal position (1=S except for grape, where 2=S; 0.2=FB or FN, 0.1=G or -, and 0=F), total synteny value (the average of all synteny values for all outgroups), whether or not the gene had any exons (TAIR9 data), TAIR8 chromosome start/stop, functional gene space, the difference between gene space and functional gene space. Functional gene space, CNS data, GO terms, and homeolog data is from Version 2 as annotated by S. Subramaniam in this lab, unpublished. The CNS data was originally from TAIR8 but has been merged with TAIR9. Following this are TAIR9 GEvo link, and best hit data in A. lyrata and poplar for all transposed genes.
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When using this data, please cite the original publication:

Woodhouse MR, Tang H, Freeling M (2011) Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. The Plant Cell 23(12): 4241-4253. http://dx.doi.org/10.1105/tpc.111.093567

Additionally, please cite the Dryad data package:

Woodhouse MR, Tang H, Freeling M (2011) Data from: Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.275kv81m
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