Data from: Protein structure determination using metagenome sequence data

Ovchinnikov S, Park H, Varghese N, Huang P, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D

Date Published: January 20, 2017

DOI: http://dx.doi.org/10.5061/dryad.27p4s

 

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Title Starting models
Downloaded 10 times
Description Starting models for the iterative hybrid protocol. Based on the prefix you can determine where the models are coming from. (ab_v01) top10 denovo models using sigmoid only restraints. (ab_v02) top10 denovo models using bounded+sigmoid restraints during centroid, and sigmoid only during full atom stage. (mp) top10 map-align models from one round of hybrid.
Download aah4043_starting.zip (772.7 Mb)
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Title Initial models
Downloaded 11 times
Description Top models from initial experiments where only the (ab_v01+ab_v02) OR mp models are iteratively hybridized
Download aah4043_initial.zip (971.3 Mb)
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Title Top 30 models
Downloaded 12 times
Description Top 30 models across 30 iterations of hybrid of ab_v01+ab_v02 + map-align models.
Download aah4043_top_30.zip (777.8 Mb)
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Title Final models
Downloaded 19 times
Description Single model for each target.
Download aah4043_final.zip (31.52 Mb)
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When using this data, please cite the original publication:

Ovchinnikov S, Park H, Varghese N, Huang P, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D (2017) Protein structure determination using metagenome sequence data. Science 355(6322): 294-298. http://dx.doi.org/10.1126/science.aah4043

Additionally, please cite the Dryad data package:

Ovchinnikov S, Park H, Varghese N, Huang P, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D (2017) Data from: Protein structure determination using metagenome sequence data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.27p4s
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