Data from: Phylogeography and demographic history of two widespread Indo-Pacific mudskippers (Gobiidae: Periophthalmus)

Polgar G, Zane L, Babbucci M, Barbisan F, Patarnello T, Rüber L, Papetti C

Date Published: February 10, 2014

DOI: http://dx.doi.org/10.5061/dryad.27q3r

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Traits of the 334 specimens
Downloaded 10 times
Description A list of all 334 specimens of Periophthalmus argentilineatus, Periophthalmus kalolo and of the outgroup P. malaccensis. For each call number that is used in the nexus files, the species, the sample locality and the population in which the specimen was included by the AMOVA in the paper, are indicated.
Download Polgar_etal2014_334-specimens.txt (24.46 Kb)
Details View File Details
Title 16S sequences to be combined with dloop
Downloaded 5 times
Description These are the 26 16S sequences that were combined in BEAST with the 26 d-loop sequences to reconstruct the combined tree.
Download Polgar_etal2014_16S-sequences-to-be-combi...op.nex (17.26 Kb)
Details View File Details
Title 16S sequences for calibration
Downloaded 9 times
Description The 16S fish sequences used in the 16S molecular clock
Download Polgar_etal2014_dataset-16S-calibration-nodes.nex (19.66 Kb)
Details View File Details
Title dloop-sequences to be combined with 16s
Downloaded 6 times
Description The 26 d-loop sequences used to build the combined tree in BEAST.
Download Polgar_etal2014_dloop-sequences-to-be-com...6s.nex (13.07 Kb)
Details View File Details
Title d-loop dataset
Downloaded 12 times
Description The complete D-loop dataset (334 sequences)
Download Polgar_etal2014_dataset-dloop-334-sequences.nex (193.6 Kb)
Details View File Details
Title rag1 dataset
Downloaded 8 times
Description The complete rag1 dataset (22 sequences)
Download Polgar_etal2014_dataset-rag1.nex (32.82 Kb)
Details View File Details

When using this data, please cite the original publication:

Polgar G, Zane L, Babbucci M, Barbisan F, Patarnello T, Rüber L, Papetti C (2014) Phylogeography and demographic history of two widespread Indo-Pacific mudskippers (Gobiidae: Periophthalmus). Molecular Phylogenetics and Evolution 73: 161–176. http://dx.doi.org/10.1016/j.ympev.2014.01.014

Additionally, please cite the Dryad data package:

Polgar G, Zane L, Babbucci M, Barbisan F, Patarnello T, Rüber L, Papetti C (2014) Data from: Phylogeography and demographic history of two widespread Indo-Pacific mudskippers (Gobiidae: Periophthalmus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.27q3r
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: