Data from: Phylogenetic relationships and character evolution in Heuchera (Saxifragaceae) on the basis of multiple nuclear loci

Folk RA, Freudenstein JV

Date Published: April 21, 2015

DOI: http://dx.doi.org/10.5061/dryad.298d0

 

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Title Concatenated DNA + morphology tree, maximum likelihood
Description This tree corresponds to the maximum likelihood tree of Figure 1. The tree was inferred in RAxML using a partitioned GTR-GAMMA model. Please note for interpretation of taxon labels: Heuchera cuneata = Heuchera rubescens var. truncata.
Download RAxML_bipartitions.DNAmorph.tre (4.849 Kb)
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Title DNA + morphology matrix
Description This file includes all data used for phylogenetic inference. Alignments were performed in MAFFT. The ribosomal and DNA only analysis can be replicated by deleting partitions. Please note for interpretation of taxon labels: Heuchera cuneata = Heuchera rubescens var. truncata.
Download alllocimorph.phy (561.9 Kb)
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Title Partition file
Description This is a partition file, in RAxML format, for the entire phylogenetic dataset. The analyses for subsets of data can be replicated by deactivating partitions.
Download morphdnapartition.txt (817 bytes)
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Title Ribosomal DNA + morphology tree, maximum likelihood
Description This tree corresponds to Figure 2. The tree was inferred in RAxML using a partitioned GTR-GAMMA model.
Download RAxML_bipartitions.ribosomalmorph.tre (5.023 Kb)
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Title Concatenated DNA tree, maximum likelihood
Description This tree corresponds to Supplement S5. The tree was inferred in RAxML using a partitioned GTR-GAMMA model.
Download RAxML_bipartitions.DNAonly.tre (4.87 Kb)
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Title Ribosomal DNA tree, maximum likelihood.
Description This tree corresponds to supplement S6. The tree was inferred in RAxML using a partitioned GTR-GAMMA model.
Download RAxML_bipartitions.ribosomalonly.tre (5.156 Kb)
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Title Data file for Mesquite.
Description This includes the characters used for diversification analyses as well as the reduced tree file.
Download mesquitefinalfile.nex (13.87 Kb)
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When using this data, please cite the original publication:

Folk RA, Freudenstein JV (2014) Phylogenetic relationships and character evolution in Heuchera (Saxifragaceae) on the basis of multiple nuclear loci. American Journal of Botany 101(9): 1532-1550. http://dx.doi.org/10.3732/ajb.1400290

Additionally, please cite the Dryad data package:

Folk RA, Freudenstein JV (2014) Data from: Phylogenetic relationships and character evolution in Heuchera (Saxifragaceae) on the basis of multiple nuclear loci. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.298d0
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