Data from: Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Bonito G, Reynolds H, Hodkinson BP, Nelson J, Tuskan G, Robeson II MS, Schadt CW, Vilgalys R

Date Published: June 3, 2014

DOI: http://dx.doi.org/10.5061/dryad.2b2dj

 

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Title PopulusBioassayGrowth
Downloaded 39 times
Description Here are raw data pertaining to plant survivorship & height (growth) during the course of this experiment.
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Title 16S_host_denoised_by_sampleID.fasta
Downloaded 10 times
Description fastq file with all denoised 16S sequences produced in this study
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Title 28S_host_denoised_by_SampleID.fasta.tar
Downloaded 6 times
Description All denoised 28S (rDNA) sequences produced in this study in fasta format
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Title ITS1_host_denoised_by_SampleID.fasta.tar
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Description All denoised ITS1 sequences produced in this study in fasta format and by Sample ID
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Title ITS2_host_denoised_by_SampleID.fasta.tar
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Description All denoised ITS2 sequences produced in this study in fasta format and by Sample ID
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Title 18S_host_denoised_by_SampleID.fasta.tar
Downloaded 4 times
Description All denoised 18S rDNA sequences produced in this study in fasta format and by Sample ID
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Title SampleMetadata_GenBank_Accessions
Downloaded 47 times
Description Includes all the sample metadata associated with each sample, and BioProject data.
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Title ITS1.fna_rep_set
Downloaded 2 times
Description ITS1 rep set of OTUs corresponding to OTUs in supplement 3
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Title ITS1_otu_tableSortedSoil
Downloaded 47 times
Description ITS1 OTU table (.xls format) corresponding to ITS1 OTU fasta file
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Title Glomeromycota_454_Host_All
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Description Nexus file including 54 representative OTU sequences from this experiment and reference sequences
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When using this data, please cite the original publication:

Bonito G, Reynolds H, Robeson II MS, Nelson J, Hodkinson BP, Tuskan G, Schadt CW, Vilgalys R (2014) Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology 23(13): 3356–3370. http://dx.doi.org/10.1111/mec.12821

Additionally, please cite the Dryad data package:

Bonito G, Reynolds H, Hodkinson BP, Nelson J, Tuskan G, Robeson II MS, Schadt CW, Vilgalys R (2014) Data from: Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2b2dj
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