Data from: Resolving the Northern Hemisphere source region for the long-distance dispersal event that gave rise to the South American endemic dung moss Tetraplodon fuegianus

Lewis L, Biersma EM, Carey SB, Holsinger K, McDaniel SF, Rozzi R, Goffinet B

Date Published: October 19, 2017

DOI: https://doi.org/10.5061/dryad.2cs4v

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Title Aligned supermatrices & SNP matrices
Description Add data sets referred to in Table 1 and Table 2 are included. Supermatrices are in nexus format and unlinked SNP files are in .str format, and include sample assignment information based on RAxML analyses (see Figure 1). Sample assignment information should not be used to inform STRUCTURE analyses however, but to help with graphical display and order of samples. All data files were produced in PyRAD v. 2.17. (Eaton 2014) Details of data file generation can be found in the main text and SI of the associated paper.
Download Aligned-Supermatrices_&_SNPmatrices.zip (12.78 Mb)
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Title demultiplexed & trimmed reads for all samples (n=81)
Description Compressed package with demultiplexed and trimmed RADseq data for 81 samples (i.e. 81 .fastq.gz files representing all samples listed in Appendix S1). Demultiplexing and trimming was done in PyRAD v. 2.17 (Eaton 2014). Reads were de-multiplexed allowing for a maximum of two mismatches in each eight bp barcode, and restriction enzyme cut sites and adapter sequences were removed. .fastq.gz files are named as such: Sample ID-Collection#.fastq.gz. For example, Nepal_1_1101.fastq.gz is for the sample identified as "Nepal_1" in the associated publication, which was also assigned collection number 1101. The sample ID provides information on the general collection locality.
Download Demultiplexed_and_Trimmed_AllSamples.zip (14.76 Gb)
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When using this data, please cite the original publication:

Lewis LR, Biersma EM, Carey SB, Holsinger K, McDaniel SF, Rozzi R, Goffinet B (2017) Resolving the northern hemisphere source region for the long-distance dispersal event that gave rise to the South American endemic dung mossTetraplodon fuegianus. American Journal of Botany 104(11): 1651-1659. https://doi.org/10.3732/ajb.1700144

Additionally, please cite the Dryad data package:

Lewis L, Biersma EM, Carey SB, Holsinger K, McDaniel SF, Rozzi R, Goffinet B (2017) Data from: Resolving the Northern Hemisphere source region for the long-distance dispersal event that gave rise to the South American endemic dung moss Tetraplodon fuegianus. Dryad Digital Repository. https://doi.org/10.5061/dryad.2cs4v
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